Click here to switch to the map view.

The map label for this gene is ybeQ [H]

Identifier: 46445788

GI number: 46445788

Start: 231569

End: 232468

Strand: Direct

Name: ybeQ [H]

Synonym: pc0154

Alternate gene names: 46445788

Gene position: 231569-232468 (Clockwise)

Preceding gene: 46445787

Following gene: 46445790

Centisome position: 9.59

GC content: 37.78

Gene sequence:

>900_bases
ATGCAATTAAAATATATAGATGGCGATGCTCCTAGCAACTACTTTGCTCTTTCTTCTAGCCCAGATCCAAAATTAAGCCA
AAGTACAATAAACAATGGTAAAACATATATCCTTTTAGGAAGCTTTGAAAAAACATACCCTTTAATGCGTAGAATTGGAA
TTGGAATATATATAACTTTTAAGACTTTATGTACGTTAGGCTTGGGGCTTTTTTCTGAAAATGTTCGAGAAGATTGGAAG
TCTTTTTGGAGCGGTAAAAAAAGTAAAATTATTTACTCTTCTTCTCCCTCATTTTTACCAATTAAACTTTTGGCAGACCA
AGGCGATGCAAAAGCTCAATATAAACTTGGAGTCATATATGCCAATGGGCGGGGTATTACACAATCAGATACAGAAGCTT
TTAAATATTTTAAACTCGCTGCCGATCAAGGTCATGCAGTTGCTCAATATAACCTTGGAGTCATATATGACAATGGGCAG
GGTATTACACAATCAGAGCAAGAGGCTATTAAATATTACAAACTCGCTGCCGATCAAGGTGATGCAGATGCTCAATATAA
TCTTGGAGTCATATATGCCAATGGGCAGGGTATTACACAATCAGATGCAGAAGCTTTTAAATATTTTAAACTCGCTGCCG
ATCAAGGTGATGCAGATGCCCAATACGAGCTTGGAGTCAGGTATGCCAATGGGCAGGGTATTACACAATCAGATACAGAA
GCTTTTAAATATTTTAAACTCGCTGCCGATCAAGGTGATGCAGATGCTCAATACAACCTCGAAGTCAGATATTCCAATGG
ACGAGGTGTTATACAATCAGATCAAGAAGCTTTTAAATATTTTAAACTCGCTGCCGATCAAGGTGATGCAGATGCCCAAT
ACGAGCTTGGAACTCTGTAA

Upstream 100 bases:

>100_bases
ATATAAAAATTAAATTGTATATTATGTAAATATATCTTATTATTAATAAGAAAAAACAAAATATTATAAAGTTTACTAAT
AAATTAAAAAATAGAATTCT

Downstream 100 bases:

>100_bases
AAAAGGGGCAAGAAGTTGAACAATCCAGTCAACTAGTTCTAAGGTATTATCAACTTGCTACTGAACAAGGGAATGCTCAG
GCAGCAATAAAAATTGGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MQLKYIDGDAPSNYFALSSSPDPKLSQSTINNGKTYILLGSFEKTYPLMRRIGIGIYITFKTLCTLGLGLFSENVREDWK
SFWSGKKSKIIYSSSPSFLPIKLLADQGDAKAQYKLGVIYANGRGITQSDTEAFKYFKLAADQGHAVAQYNLGVIYDNGQ
GITQSEQEAIKYYKLAADQGDADAQYNLGVIYANGQGITQSDAEAFKYFKLAADQGDADAQYELGVRYANGQGITQSDTE
AFKYFKLAADQGDADAQYNLEVRYSNGRGVIQSDQEAFKYFKLAADQGDADAQYELGTL

Sequences:

>Translated_299_residues
MQLKYIDGDAPSNYFALSSSPDPKLSQSTINNGKTYILLGSFEKTYPLMRRIGIGIYITFKTLCTLGLGLFSENVREDWK
SFWSGKKSKIIYSSSPSFLPIKLLADQGDAKAQYKLGVIYANGRGITQSDTEAFKYFKLAADQGHAVAQYNLGVIYDNGQ
GITQSEQEAIKYYKLAADQGDADAQYNLGVIYANGQGITQSDAEAFKYFKLAADQGDADAQYELGVRYANGQGITQSDTE
AFKYFKLAADQGDADAQYNLEVRYSNGRGVIQSDQEAFKYFKLAADQGDADAQYELGTL
>Mature_299_residues
MQLKYIDGDAPSNYFALSSSPDPKLSQSTINNGKTYILLGSFEKTYPLMRRIGIGIYITFKTLCTLGLGLFSENVREDWK
SFWSGKKSKIIYSSSPSFLPIKLLADQGDAKAQYKLGVIYANGRGITQSDTEAFKYFKLAADQGHAVAQYNLGVIYDNGQ
GITQSEQEAIKYYKLAADQGDADAQYNLGVIYANGQGITQSDAEAFKYFKLAADQGDADAQYELGVRYANGQGITQSDTE
AFKYFKLAADQGDADAQYNLEVRYSNGRGVIQSDQEAFKYFKLAADQGDADAQYELGTL

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI19923669, Length=189, Percent_Identity=40.2116402116402, Blast_Score=125, Evalue=5e-29,
Organism=Homo sapiens, GI151301150, Length=172, Percent_Identity=36.6279069767442, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI217330658, Length=165, Percent_Identity=34.5454545454545, Blast_Score=98, Evalue=8e-21,
Organism=Homo sapiens, GI217330656, Length=165, Percent_Identity=34.5454545454545, Blast_Score=98, Evalue=8e-21,
Organism=Homo sapiens, GI33620759, Length=165, Percent_Identity=32.7272727272727, Blast_Score=73, Evalue=3e-13,
Organism=Escherichia coli, GI87081769, Length=203, Percent_Identity=36.4532019704434, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1786867, Length=136, Percent_Identity=40.4411764705882, Blast_Score=86, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17563256, Length=193, Percent_Identity=35.7512953367876, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI21355295, Length=214, Percent_Identity=36.4485981308411, Blast_Score=111, Evalue=7e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 32945; Mature: 32945

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLKYIDGDAPSNYFALSSSPDPKLSQSTINNGKTYILLGSFEKTYPLMRRIGIGIYITF
CEEEEECCCCCCCEEEECCCCCCCCCHHHCCCCCEEEEEECCHHHHHHHHHHCCEEEEEH
KTLCTLGLGLFSENVREDWKSFWSGKKSKIIYSSSPSFLPIKLLADQGDAKAQYKLGVIY
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEEECCCCCCEEEEEEEEE
ANGRGITQSDTEAFKYFKLAADQGHAVAQYNLGVIYDNGQGITQSEQEAIKYYKLAADQG
ECCCCCCCCCHHHEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHEEECCCC
DADAQYNLGVIYANGQGITQSDAEAFKYFKLAADQGDADAQYELGVRYANGQGITQSDTE
CCCCEEEEEEEEECCCCCCCCHHHHHEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCHH
AFKYFKLAADQGDADAQYNLEVRYSNGRGVIQSDQEAFKYFKLAADQGDADAQYELGTL
HEEEEEEECCCCCCCCEEEEEEEECCCCCEEECCHHHHHHHEEECCCCCCCCCEEECCC
>Mature Secondary Structure
MQLKYIDGDAPSNYFALSSSPDPKLSQSTINNGKTYILLGSFEKTYPLMRRIGIGIYITF
CEEEEECCCCCCCEEEECCCCCCCCCHHHCCCCCEEEEEECCHHHHHHHHHHCCEEEEEH
KTLCTLGLGLFSENVREDWKSFWSGKKSKIIYSSSPSFLPIKLLADQGDAKAQYKLGVIY
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEEECCCCCCEEEEEEEEE
ANGRGITQSDTEAFKYFKLAADQGHAVAQYNLGVIYDNGQGITQSEQEAIKYYKLAADQG
ECCCCCCCCCHHHEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHEEECCCC
DADAQYNLGVIYANGQGITQSDAEAFKYFKLAADQGDADAQYELGVRYANGQGITQSDTE
CCCCEEEEEEEEECCCCCCCCHHHHHEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCHH
AFKYFKLAADQGDADAQYNLEVRYSNGRGVIQSDQEAFKYFKLAADQGDADAQYELGTL
HEEEEEEECCCCCCCCEEEEEEEECCCCCEEECCHHHHHHHEEECCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]