| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is mutL [H]
Identifier: 46445773
GI number: 46445773
Start: 212429
End: 214387
Strand: Reverse
Name: mutL [H]
Synonym: pc0139
Alternate gene names: 46445773
Gene position: 214387-212429 (Counterclockwise)
Preceding gene: 46445779
Following gene: 46445765
Centisome position: 8.88
GC content: 35.07
Gene sequence:
>1959_bases ATGGCTTCGTTACCTAAAATCCATGTTTTAACTGAACAAACTATTAATCAAATTGCTGCTGGAGAGGTTATTGAAAATCC CGCTTCGGTAGTCAAAGAATTAGTTGAAAACTCCATGGATGCTGGAGCAACAGAGATTTGCGTTGAAATACAGGGAGGAG GGCGACAACTTATCCGTATTTCTGATAACGGATGTGGAATGAGCGAAGATGACGCTCTTTTGTGTTTAGAAAGACACGCT ACATCCAAAATAAAAAATGTGGACGATATTGAAAATATTCTTACTATGGGATTTAGAGGAGAAGCTATCCCTTCAATCGC TTCGATTTCGAAATTTTCACTTCTTACCACACCTCAATCAGGCGTTAGTTCAATTGATAAATTAATGCAAGGGTCTTTGA CAATTGTCGAAGGTGGGCGTATTCAATCACATGGGAAAGCGACTCGTTCTCCTGGTACAACAATTGAAGTTAAATCACTT TTTTTTAATGTGCCAGTCAGACGTAAATTTCAACGCTCACCTAATTATGATACACAAGAAATCGTTAAAATTCTGACAAA TTTGAGTTTAGCTTATCCAAATATTGCTTTTGAGCTAATTAGCGATCAAAAATCCATCTTGAAAATGCCTCTTATTTCAA TCGATATTAATCATCAACAGCAATTATTAAAAAAAATCGAAACATTACTAGGTAAAGAATTTTCTCATTCTCTCTGCCCT CTTACTTTTTCTTCTCCTCCTTATGAAATAGAAGGCTATATTGGGCTACCTTCTATTCATAAACCCAACCGAACCAGTCA ATACCTATTCATTAATCGCCGCGCTGTTTATTCTCCTCTTATTGGGGTAGCTATTCGAGAAGGATATGGAACTATGCTCG GTACAAATAGGTATCCCGTTTTTATTTTACATCTCCGCCTTCCAGGCTCACTTTTTGACGTTAATGTACACCCACAAAAA AAAGAAGTGCGCTTAAGACAGGAGCAAAAACTTAAAGAGACTTTAATCAATGCTGTTCAAAAAGCCTTAAGACAAGAAAA TCCCCATCAAGCCTTTTCCGAAATGGCTAACCAAGTTCAAAATGAAACTTGCGTTTATCCTTGGTCAGCCCCCTCTTTTC AAACTCCTTTTCAGGTCAAAGAAGAGTCATGGGAATTCAAACCTAATCACAAATTTTCTACATCGATCGATGAAAACCCC ACTTTTATTAAAAACATAGAAAATTTAGAGTTAAAAAATGAAACTTTTAATCCCTCTTCTTTTATCCAAACTAGGTCTCT TCCTACTAAAGAAGAACCAACTTTTTTTATTTCCCATCAACAAAAAGCGCCTAAAGTATTACAAACTTTAACAGGCTATT GTTTGTTAGATGCTTGTCAAGTAAAAGGAACATTTAATAGCAATCAAGAATTGAATGGACTTCTATTGCTCGATCAAAAA CAAGCCTATTCGCGTATTAAATATGAAAAACTGCTTTTTAATCTCAAAGGAAAGCAAGCTATTCAGCAATTAATTGTCCC TCTGACGTTCCAATTTTCTATTCCAGAAACTACGTTATTAAAGACACACTTAGAAAGTTTAAATCAGTTAGGTTTTTCGA TGCGTGAATTTGGAAATCAAACATTCGTGTTAGATGCTTTTCCTTCTATAATGTCTGAACAAGAAATTGAAACTTGTTTG TTAGAAATGATTCAAGATTTGTCAACTTTACAACAGAGTCAGCAACTCCAGATAAAAATAACAGAAAAGCTTGCGTTAAC TGCTAGCCGTTCTTCTTTTTCTAAAAATATCCAATTATCAATCGATGAAGGTCAAGGATTAGTCGATCAACTTTTTATGT GCGATATGCCTTATCTTAGCCCCTCAGGATCTCCTATTTTTGCCTATTTTAAACTTCAAGAGCTAGCTGATTTATTTCGA AAATATTCTTATTTCCCTTCTCAAGATTCAACTTTTTAA
Upstream 100 bases:
>100_bases GATAACTAAAATTTTCTAAAAAAATGCGATTTTTGAATAAGATTTAAAAGTTTCTGATTTAGTTTTAAAAGGCCCATTTT CAATCGAATCAGGCAGGCTT
Downstream 100 bases:
>100_bases ATCTATAAAAAATAAAAAAAATTCTCCATCAAAATTTCTAAAGAAACTCCAGAATTTATATTTCGTATAAAAGGTACTTT TTAAATAGTTTTTAAAATTA
Product: putative methyl-directed mismatch repair (MMR) protein, mutL
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 652; Mature: 651
Protein sequence:
>652_residues MASLPKIHVLTEQTINQIAAGEVIENPASVVKELVENSMDAGATEICVEIQGGGRQLIRISDNGCGMSEDDALLCLERHA TSKIKNVDDIENILTMGFRGEAIPSIASISKFSLLTTPQSGVSSIDKLMQGSLTIVEGGRIQSHGKATRSPGTTIEVKSL FFNVPVRRKFQRSPNYDTQEIVKILTNLSLAYPNIAFELISDQKSILKMPLISIDINHQQQLLKKIETLLGKEFSHSLCP LTFSSPPYEIEGYIGLPSIHKPNRTSQYLFINRRAVYSPLIGVAIREGYGTMLGTNRYPVFILHLRLPGSLFDVNVHPQK KEVRLRQEQKLKETLINAVQKALRQENPHQAFSEMANQVQNETCVYPWSAPSFQTPFQVKEESWEFKPNHKFSTSIDENP TFIKNIENLELKNETFNPSSFIQTRSLPTKEEPTFFISHQQKAPKVLQTLTGYCLLDACQVKGTFNSNQELNGLLLLDQK QAYSRIKYEKLLFNLKGKQAIQQLIVPLTFQFSIPETTLLKTHLESLNQLGFSMREFGNQTFVLDAFPSIMSEQEIETCL LEMIQDLSTLQQSQQLQIKITEKLALTASRSSFSKNIQLSIDEGQGLVDQLFMCDMPYLSPSGSPIFAYFKLQELADLFR KYSYFPSQDSTF
Sequences:
>Translated_652_residues MASLPKIHVLTEQTINQIAAGEVIENPASVVKELVENSMDAGATEICVEIQGGGRQLIRISDNGCGMSEDDALLCLERHA TSKIKNVDDIENILTMGFRGEAIPSIASISKFSLLTTPQSGVSSIDKLMQGSLTIVEGGRIQSHGKATRSPGTTIEVKSL FFNVPVRRKFQRSPNYDTQEIVKILTNLSLAYPNIAFELISDQKSILKMPLISIDINHQQQLLKKIETLLGKEFSHSLCP LTFSSPPYEIEGYIGLPSIHKPNRTSQYLFINRRAVYSPLIGVAIREGYGTMLGTNRYPVFILHLRLPGSLFDVNVHPQK KEVRLRQEQKLKETLINAVQKALRQENPHQAFSEMANQVQNETCVYPWSAPSFQTPFQVKEESWEFKPNHKFSTSIDENP TFIKNIENLELKNETFNPSSFIQTRSLPTKEEPTFFISHQQKAPKVLQTLTGYCLLDACQVKGTFNSNQELNGLLLLDQK QAYSRIKYEKLLFNLKGKQAIQQLIVPLTFQFSIPETTLLKTHLESLNQLGFSMREFGNQTFVLDAFPSIMSEQEIETCL LEMIQDLSTLQQSQQLQIKITEKLALTASRSSFSKNIQLSIDEGQGLVDQLFMCDMPYLSPSGSPIFAYFKLQELADLFR KYSYFPSQDSTF >Mature_651_residues ASLPKIHVLTEQTINQIAAGEVIENPASVVKELVENSMDAGATEICVEIQGGGRQLIRISDNGCGMSEDDALLCLERHAT SKIKNVDDIENILTMGFRGEAIPSIASISKFSLLTTPQSGVSSIDKLMQGSLTIVEGGRIQSHGKATRSPGTTIEVKSLF FNVPVRRKFQRSPNYDTQEIVKILTNLSLAYPNIAFELISDQKSILKMPLISIDINHQQQLLKKIETLLGKEFSHSLCPL TFSSPPYEIEGYIGLPSIHKPNRTSQYLFINRRAVYSPLIGVAIREGYGTMLGTNRYPVFILHLRLPGSLFDVNVHPQKK EVRLRQEQKLKETLINAVQKALRQENPHQAFSEMANQVQNETCVYPWSAPSFQTPFQVKEESWEFKPNHKFSTSIDENPT FIKNIENLELKNETFNPSSFIQTRSLPTKEEPTFFISHQQKAPKVLQTLTGYCLLDACQVKGTFNSNQELNGLLLLDQKQ AYSRIKYEKLLFNLKGKQAIQQLIVPLTFQFSIPETTLLKTHLESLNQLGFSMREFGNQTFVLDAFPSIMSEQEIETCLL EMIQDLSTLQQSQQLQIKITEKLALTASRSSFSKNIQLSIDEGQGLVDQLFMCDMPYLSPSGSPIFAYFKLQELADLFRK YSYFPSQDSTF
Specific function: This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-bindi
COG id: COG0323
COG function: function code L; DNA mismatch repair enzyme (predicted ATPase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA mismatch repair mutL/hexB family [H]
Homologues:
Organism=Homo sapiens, GI4557757, Length=349, Percent_Identity=29.512893982808, Blast_Score=157, Evalue=2e-38, Organism=Homo sapiens, GI4505911, Length=337, Percent_Identity=29.9703264094956, Blast_Score=139, Evalue=1e-32, Organism=Homo sapiens, GI189458898, Length=337, Percent_Identity=29.9703264094956, Blast_Score=138, Evalue=2e-32, Organism=Homo sapiens, GI4505913, Length=347, Percent_Identity=28.5302593659942, Blast_Score=135, Evalue=9e-32, Organism=Homo sapiens, GI310128478, Length=347, Percent_Identity=28.5302593659942, Blast_Score=135, Evalue=1e-31, Organism=Homo sapiens, GI189458896, Length=328, Percent_Identity=29.5731707317073, Blast_Score=125, Evalue=8e-29, Organism=Homo sapiens, GI91992162, Length=275, Percent_Identity=29.0909090909091, Blast_Score=106, Evalue=6e-23, Organism=Homo sapiens, GI91992160, Length=275, Percent_Identity=29.0909090909091, Blast_Score=106, Evalue=7e-23, Organism=Homo sapiens, GI310128480, Length=300, Percent_Identity=26.6666666666667, Blast_Score=99, Evalue=1e-20, Organism=Homo sapiens, GI263191589, Length=260, Percent_Identity=23.4615384615385, Blast_Score=68, Evalue=3e-11, Organism=Escherichia coli, GI1790612, Length=578, Percent_Identity=29.4117647058824, Blast_Score=220, Evalue=2e-58, Organism=Caenorhabditis elegans, GI71991825, Length=328, Percent_Identity=30.7926829268293, Blast_Score=154, Evalue=1e-37, Organism=Caenorhabditis elegans, GI17562796, Length=357, Percent_Identity=26.0504201680672, Blast_Score=118, Evalue=1e-26, Organism=Saccharomyces cerevisiae, GI6323819, Length=353, Percent_Identity=28.6118980169972, Blast_Score=151, Evalue=2e-37, Organism=Saccharomyces cerevisiae, GI6324247, Length=354, Percent_Identity=28.5310734463277, Blast_Score=130, Evalue=9e-31, Organism=Saccharomyces cerevisiae, GI6325093, Length=353, Percent_Identity=24.0793201133144, Blast_Score=76, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6323063, Length=352, Percent_Identity=24.7159090909091, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI17136968, Length=350, Percent_Identity=31.4285714285714, Blast_Score=174, Evalue=1e-43, Organism=Drosophila melanogaster, GI17136970, Length=366, Percent_Identity=25.1366120218579, Blast_Score=111, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR002099 - InterPro: IPR013507 - InterPro: IPR014762 - InterPro: IPR020667 - InterPro: IPR014763 - InterPro: IPR014790 - InterPro: IPR020568 - InterPro: IPR014721 [H]
Pfam domain/function: PF01119 DNA_mis_repair; PF02518 HATPase_c; PF08676 MutL_C [H]
EC number: NA
Molecular weight: Translated: 73559; Mature: 73428
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASLPKIHVLTEQTINQIAAGEVIENPASVVKELVENSMDAGATEICVEIQGGGRQLIRI CCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEE SDNGCGMSEDDALLCLERHATSKIKNVDDIENILTMGFRGEAIPSIASISKFSLLTTPQS CCCCCCCCCCCCEEEEHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHEEEEECCCH GVSSIDKLMQGSLTIVEGGRIQSHGKATRSPGTTIEVKSLFFNVPVRRKFQRSPNYDTQE HHHHHHHHHCCCEEEEECCEECCCCCCCCCCCCEEEEEHHEECCCHHHHHCCCCCCCHHH IVKILTNLSLAYPNIAFELISDQKSILKMPLISIDINHQQQLLKKIETLLGKEFSHSLCP HHHHHHHCHHCCCCHHHHHHHCCHHHHHCCEEEEECCHHHHHHHHHHHHHCCHHCCCCCC LTFSSPPYEIEGYIGLPSIHKPNRTSQYLFINRRAVYSPLIGVAIREGYGTMLGTNRYPV EEECCCCCEEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCEECCCCCCE FILHLRLPGSLFDVNVHPQKKEVRLRQEQKLKETLINAVQKALRQENPHQAFSEMANQVQ EEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC NETCVYPWSAPSFQTPFQVKEESWEFKPNHKFSTSIDENPTFIKNIENLELKNETFNPSS CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEECCCCCCCHH FIQTRSLPTKEEPTFFISHQQKAPKVLQTLTGYCLLDACQVKGTFNSNQELNGLLLLDQK HHEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECH QAYSRIKYEKLLFNLKGKQAIQQLIVPLTFQFSIPETTLLKTHLESLNQLGFSMREFGNQ HHHHHHHHHHHHHHCCCHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHCCC TFVLDAFPSIMSEQEIETCLLEMIQDLSTLQQSQQLQIKITEKLALTASRSSFSKNIQLS EEEEECCHHHHCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHEEEEECCCCCCCCEEEE IDEGQGLVDQLFMCDMPYLSPSGSPIFAYFKLQELADLFRKYSYFPSQDSTF ECCCCCHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure ASLPKIHVLTEQTINQIAAGEVIENPASVVKELVENSMDAGATEICVEIQGGGRQLIRI CCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEE SDNGCGMSEDDALLCLERHATSKIKNVDDIENILTMGFRGEAIPSIASISKFSLLTTPQS CCCCCCCCCCCCEEEEHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHEEEEECCCH GVSSIDKLMQGSLTIVEGGRIQSHGKATRSPGTTIEVKSLFFNVPVRRKFQRSPNYDTQE HHHHHHHHHCCCEEEEECCEECCCCCCCCCCCCEEEEEHHEECCCHHHHHCCCCCCCHHH IVKILTNLSLAYPNIAFELISDQKSILKMPLISIDINHQQQLLKKIETLLGKEFSHSLCP HHHHHHHCHHCCCCHHHHHHHCCHHHHHCCEEEEECCHHHHHHHHHHHHHCCHHCCCCCC LTFSSPPYEIEGYIGLPSIHKPNRTSQYLFINRRAVYSPLIGVAIREGYGTMLGTNRYPV EEECCCCCEEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCEECCCCCCE FILHLRLPGSLFDVNVHPQKKEVRLRQEQKLKETLINAVQKALRQENPHQAFSEMANQVQ EEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC NETCVYPWSAPSFQTPFQVKEESWEFKPNHKFSTSIDENPTFIKNIENLELKNETFNPSS CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEECCCCCCCHH FIQTRSLPTKEEPTFFISHQQKAPKVLQTLTGYCLLDACQVKGTFNSNQELNGLLLLDQK HHEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECH QAYSRIKYEKLLFNLKGKQAIQQLIVPLTFQFSIPETTLLKTHLESLNQLGFSMREFGNQ HHHHHHHHHHHHHHCCCHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHCCC TFVLDAFPSIMSEQEIETCLLEMIQDLSTLQQSQQLQIKITEKLALTASRSSFSKNIQLS EEEEECCHHHHCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHEEEEECCCCCCCCEEEE IDEGQGLVDQLFMCDMPYLSPSGSPIFAYFKLQELADLFRKYSYFPSQDSTF ECCCCCHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA