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The map label for this gene is psdD [H]

Identifier: 46445657

GI number: 46445657

Start: 34867

End: 35784

Strand: Direct

Name: psdD [H]

Synonym: pc0023

Alternate gene names: 46445657

Gene position: 34867-35784 (Clockwise)

Preceding gene: 46445654

Following gene: 46445661

Centisome position: 1.44

GC content: 34.31

Gene sequence:

>918_bases
ATGTCTGACATTATTTACGTGGATCGTTTAACGGGAAAAAAACAAATTGAAAAAGTTTACAAAGGAGCTGTCATTCGTTT
TCTTTATGGAGATAGCAAACTAAGTCGCTTAATACAACCTTTTCTTTTACCTCCATTGGCAAAATGGCCTTTTATTTCTC
ATTGTTACGGACTTTTACAAAAACGCCCTTCTAGTGTAAAAAAAATTCTACCCTTTATCAAAAATTTTGATGTAAATATT
TCAGAATTTTTAATGCCTCTAACCCATTTTAAATCATTTAATGACTTTTTTATTCGTCGTTTAAAGCCCGAGTTCCGCCC
TATTGCACTAGGAGAGAAAATCGTTTCTATGCCTGCTGATGGACGCTATTACTTTTATCAAGATATAGATCAAGTTGATG
GATTTATTGTAAAAGGCAAAAAGTTTAGTTTAGCTTCGCTATTAGAAAATAAAGAGTTAGCTCAGAAATATCAGGGAGGA
AGTATGGTGATTGTCCGACTTTGTCCCTCAGATTATCATCGATTTCATTTCCCCTGTGACTGTATCCCAGGCGAAACGCG
GCTACTTAATGGATATCTTTACTCTGTCAACCCTTTAGCGATTAAAAAAAATCTCAATATTTTTACACAAAATAAACGCA
CTATTTGCGAGTTAGCAACCACACATTTTGGAAAAATTCTTTATTTAGAAATTGGAGCGACAAATGTAGGTAGCATTCAA
CAAACCTATTGTCCATTTCAACCTGCTTTAAAAGGCGATGAAAAGGGATACTTTGAATTTGGAGGATCTTCGTTAATTTT
ATTATTTCAAAAAGGAAGGATTCGATTTGATCAAGACTTGTTAGATGCCACCCAATCTGGTTATGAAATACGCTGTTTGA
TGGGACAGCAAATGGGAACTCTTATTCAGAAGTTTTAA

Upstream 100 bases:

>100_bases
TATAACAATGAGAAATATGTTATATTAAATCTATTTTTGATGCATCTATTTGATTATCAATTAGCATCGAATTATTTGCA
TAAGTTGAGGAGTGGGCGCC

Downstream 100 bases:

>100_bases
GGATACAAAACTCTGTAAAGAGATTTGAATTTTAAAGCGTCCAATTTCCTTGAAAATAACCCAGAAAAACTCGAATGCTG
GGTTTTTCTGAGTTGTAAAA

Product: putative phosphatidylserine decarboxylase proenzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MSDIIYVDRLTGKKQIEKVYKGAVIRFLYGDSKLSRLIQPFLLPPLAKWPFISHCYGLLQKRPSSVKKILPFIKNFDVNI
SEFLMPLTHFKSFNDFFIRRLKPEFRPIALGEKIVSMPADGRYYFYQDIDQVDGFIVKGKKFSLASLLENKELAQKYQGG
SMVIVRLCPSDYHRFHFPCDCIPGETRLLNGYLYSVNPLAIKKNLNIFTQNKRTICELATTHFGKILYLEIGATNVGSIQ
QTYCPFQPALKGDEKGYFEFGGSSLILLFQKGRIRFDQDLLDATQSGYEIRCLMGQQMGTLIQKF

Sequences:

>Translated_305_residues
MSDIIYVDRLTGKKQIEKVYKGAVIRFLYGDSKLSRLIQPFLLPPLAKWPFISHCYGLLQKRPSSVKKILPFIKNFDVNI
SEFLMPLTHFKSFNDFFIRRLKPEFRPIALGEKIVSMPADGRYYFYQDIDQVDGFIVKGKKFSLASLLENKELAQKYQGG
SMVIVRLCPSDYHRFHFPCDCIPGETRLLNGYLYSVNPLAIKKNLNIFTQNKRTICELATTHFGKILYLEIGATNVGSIQ
QTYCPFQPALKGDEKGYFEFGGSSLILLFQKGRIRFDQDLLDATQSGYEIRCLMGQQMGTLIQKF
>Mature_304_residues
SDIIYVDRLTGKKQIEKVYKGAVIRFLYGDSKLSRLIQPFLLPPLAKWPFISHCYGLLQKRPSSVKKILPFIKNFDVNIS
EFLMPLTHFKSFNDFFIRRLKPEFRPIALGEKIVSMPADGRYYFYQDIDQVDGFIVKGKKFSLASLLENKELAQKYQGGS
MVIVRLCPSDYHRFHFPCDCIPGETRLLNGYLYSVNPLAIKKNLNIFTQNKRTICELATTHFGKILYLEIGATNVGSIQQ
TYCPFQPALKGDEKGYFEFGGSSLILLFQKGRIRFDQDLLDATQSGYEIRCLMGQQMGTLIQKF

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 2 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=277, Percent_Identity=27.0758122743682, Blast_Score=86, Evalue=4e-17,
Organism=Escherichia coli, GI1790604, Length=233, Percent_Identity=35.1931330472103, Blast_Score=122, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI71980843, Length=226, Percent_Identity=28.3185840707965, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI71980840, Length=226, Percent_Identity=28.3185840707965, Blast_Score=77, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6321609, Length=238, Percent_Identity=37.3949579831933, Blast_Score=151, Evalue=1e-37,
Organism=Drosophila melanogaster, GI24649526, Length=213, Percent_Identity=31.4553990610329, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24649528, Length=213, Percent_Identity=31.4553990610329, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24649524, Length=213, Percent_Identity=31.4553990610329, Blast_Score=82, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 35070; Mature: 34938

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDIIYVDRLTGKKQIEKVYKGAVIRFLYGDSKLSRLIQPFLLPPLAKWPFISHCYGLLQ
CCCEEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
KRPSSVKKILPFIKNFDVNISEFLMPLTHFKSFNDFFIRRLKPEFRPIALGEKIVSMPAD
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCEECCHHHHCCCCC
GRYYFYQDIDQVDGFIVKGKKFSLASLLENKELAQKYQGGSMVIVRLCPSDYHRFHFPCD
CEEEEEECHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCC
CIPGETRLLNGYLYSVNPLAIKKNLNIFTQNKRTICELATTHFGKILYLEIGATNVGSIQ
CCCCCCEEEEEEEEECCCEEEECCCCEEECCCHHHHHHHHHCCCEEEEEEECCCCCCCCH
QTYCPFQPALKGDEKGYFEFGGSSLILLFQKGRIRFDQDLLDATQSGYEIRCLMGQQMGT
HHCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCEECHHHHHHHCCCCEEEEECCHHHHH
LIQKF
HHHCC
>Mature Secondary Structure 
SDIIYVDRLTGKKQIEKVYKGAVIRFLYGDSKLSRLIQPFLLPPLAKWPFISHCYGLLQ
CCEEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
KRPSSVKKILPFIKNFDVNISEFLMPLTHFKSFNDFFIRRLKPEFRPIALGEKIVSMPAD
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCEECCHHHHCCCCC
GRYYFYQDIDQVDGFIVKGKKFSLASLLENKELAQKYQGGSMVIVRLCPSDYHRFHFPCD
CEEEEEECHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCC
CIPGETRLLNGYLYSVNPLAIKKNLNIFTQNKRTICELATTHFGKILYLEIGATNVGSIQ
CCCCCCEEEEEEEEECCCEEEECCCCEEECCCHHHHHHHHHCCCEEEEEEECCCCCCCCH
QTYCPFQPALKGDEKGYFEFGGSSLILLFQKGRIRFDQDLLDATQSGYEIRCLMGQQMGT
HHCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCEECHHHHHHHCCCCEEEEECCHHHHH
LIQKF
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA