| Definition | Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_005823 |
| Length | 4,277,185 |
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The map label for this gene is gidA
Identifier: 45659306
GI number: 45659306
Start: 4273100
End: 4275007
Strand: Reverse
Name: gidA
Synonym: LIC13495
Alternate gene names: 45659306
Gene position: 4275007-4273100 (Counterclockwise)
Preceding gene: NA
Following gene: 45659304
Centisome position: 99.95
GC content: 36.27
Gene sequence:
>1908_bases ATGATCGAATCCAAGAACCAATCTTTTTTTCCAAATCGTTTTGACTGTGTTGTAGTTGGAGCTGGTCACGCAGGTTCGGA GGCGGCTTATATTTCTTCTAAAGGTGGTGCGAGAACTCTTTTAATCACTATGAACTTAGATACAATCGGTCAGATGTCTT GTAATCCTGCAATTGGTGGAATTGCTAAAGGACATATGGTAAGAGAAGTAGATGCACTTGGTGGTATCATGGGTAAGATG ATCGATAACACTGGAATTCAATTTAAAATGTTGAACACTTCCAAAGGTCCGAGTGTTTGGGCGCCCCGTGCTCAAGCGGA AAAGAAAGAATATCAACTCAAAGTAAAACATACTCTTGAAGCTGAGAAGAATCTTTCAATTCGTCAAGACACCGTTGAAG AATTGATCATCGAAAACGATCAAGTAATCGGAGTAAGAACAGGTCGCGGTTTTGAAATTTTTACGAATCACGTGATCTTA ACTACAGGAACGTTTTTGTCTTCTCTTGTTCACATTGGAACGTATCAAAATGAAAACGGAAGAATGTGTGAACCTACCGT CAAAGGTCTTTCTAAGTCTTTAGCAAAATACAATTTAAAGTTAGGAAGATTAAAGACAGGAACTCCACCAAGAATTCATA AAAACTCTGTGGACTTAAGTGTACTCACAATTCAAGAAGGGGATTCAAATCCTTCTCCATTTTCTTTTTCCACAGATAAG ATTACTCGAAAACAAATTCCTTGTTTCATTACTTATACGAATGCTGAGACTCACAAACTCATTCATGAAAATCTAAATTT ATCTCCTATGTATTCTGGACAAATACAAAGCACAGGCCCTCGTTACTGCCCTTCGATCGAAGATAAAGTTGTTCGATTTG CAGATCGTGAAAGACACCAAGTGTTTCTTGAACCGGAAGGATATGAAACTTCTGAAATTTATCTCAACGGAGTTTCCACA AGTCTTCCTGAAGAAGTTCAGTGGAAGTTAGTAAGATCTCTGAAAGGTTTAGAAAATGCGGAAATTGTAAGACCCGGTTA CGCGATCGAATATGACTATGTAGATCCGACCGAACTCAAACCAACTTTAGAAACAAAAAAGATCAAAGGTCTCTATCACG CGGGACAAATCAACGGAACTACAGGTTATGAAGAAGCTGCGGCTCAAGGTTTGGTTGCGGCTTATAGTGTTCTTCATTCT TTAAGAAATCTTACTCCATTGTTGTTCAAAAGAAGTGAGTCTTATATCGGTGTTTTGATCGACGACTTAGTTCACAAAGG TGTGGAAGATCCATATAGAATGTTTACTTCGCGTGCAGAACATAGACTTCTTCTCAGACAAGATAACGCAGATCAAAGAT TAATGAAATATGGATATGATCTTGGTCTTGTAGATCAGAAAAGTTATGATTGTATGAAGGAGAAATACGAGAGAGTAAAT TCGGTTCGAGAAAAAATTTATCAGATTCCGCTTAAACCTTCAGATAAATTTCAAAATCTTTTGGATCAAAAAGGAATCAC AAACTATAAATTTGGTATGAAACTAGATTCTTTTTTAAAACGTCCGGAGATTAAAATCAAAGATATAGAGTTTATGATTC CTGAAGTAAGCTCTTGGTCTGATTTGGAAAAAAGTATTCTTGAAATGGAAATTAAGTACGAAGGTTATATTAAAAGAGAA CTTGAAACAATCCAATGGAAAAATAAATATTTGGATCTTGCAATTCCGGAAGATATAAACTACGAAATGATTGCAGGATT AAAGAAAGAAGCCATTCAAAAATTAAAAAGCCACAAACCAATGACTTTAGAAAAGGCGAGTCAAATTTCCGGAGTAGACC CAAGTGACGTAGATCTAATTCTTTATCACATCAAAGGAAAGAAAAAACAGGAAGTGGAAATTTTCTAA
Upstream 100 bases:
>100_bases GTTGGGTCTCTTGTCGATTCATCTTGCAATCGTAAGACTCAAACCTTGAGAAACATCTCATTCTAAAATTTATAATTAAT TTTCAGGAAGTTGAATTTAA
Downstream 100 bases:
>100_bases TCGTTGTTGGTTTTACTCTGAGTTCTAGGAACTCCTACTTAGCGTTTCGTTCTAAGCTTTCCCTGTAACTTGCCGTCGGA ATTTCGATAAGCGATGTCAA
Product: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
Products: NA
Alternate protein names: Glucose-inhibited division protein A [H]
Number of amino acids: Translated: 635; Mature: 635
Protein sequence:
>635_residues MIESKNQSFFPNRFDCVVVGAGHAGSEAAYISSKGGARTLLITMNLDTIGQMSCNPAIGGIAKGHMVREVDALGGIMGKM IDNTGIQFKMLNTSKGPSVWAPRAQAEKKEYQLKVKHTLEAEKNLSIRQDTVEELIIENDQVIGVRTGRGFEIFTNHVIL TTGTFLSSLVHIGTYQNENGRMCEPTVKGLSKSLAKYNLKLGRLKTGTPPRIHKNSVDLSVLTIQEGDSNPSPFSFSTDK ITRKQIPCFITYTNAETHKLIHENLNLSPMYSGQIQSTGPRYCPSIEDKVVRFADRERHQVFLEPEGYETSEIYLNGVST SLPEEVQWKLVRSLKGLENAEIVRPGYAIEYDYVDPTELKPTLETKKIKGLYHAGQINGTTGYEEAAAQGLVAAYSVLHS LRNLTPLLFKRSESYIGVLIDDLVHKGVEDPYRMFTSRAEHRLLLRQDNADQRLMKYGYDLGLVDQKSYDCMKEKYERVN SVREKIYQIPLKPSDKFQNLLDQKGITNYKFGMKLDSFLKRPEIKIKDIEFMIPEVSSWSDLEKSILEMEIKYEGYIKRE LETIQWKNKYLDLAIPEDINYEMIAGLKKEAIQKLKSHKPMTLEKASQISGVDPSDVDLILYHIKGKKKQEVEIF
Sequences:
>Translated_635_residues MIESKNQSFFPNRFDCVVVGAGHAGSEAAYISSKGGARTLLITMNLDTIGQMSCNPAIGGIAKGHMVREVDALGGIMGKM IDNTGIQFKMLNTSKGPSVWAPRAQAEKKEYQLKVKHTLEAEKNLSIRQDTVEELIIENDQVIGVRTGRGFEIFTNHVIL TTGTFLSSLVHIGTYQNENGRMCEPTVKGLSKSLAKYNLKLGRLKTGTPPRIHKNSVDLSVLTIQEGDSNPSPFSFSTDK ITRKQIPCFITYTNAETHKLIHENLNLSPMYSGQIQSTGPRYCPSIEDKVVRFADRERHQVFLEPEGYETSEIYLNGVST SLPEEVQWKLVRSLKGLENAEIVRPGYAIEYDYVDPTELKPTLETKKIKGLYHAGQINGTTGYEEAAAQGLVAAYSVLHS LRNLTPLLFKRSESYIGVLIDDLVHKGVEDPYRMFTSRAEHRLLLRQDNADQRLMKYGYDLGLVDQKSYDCMKEKYERVN SVREKIYQIPLKPSDKFQNLLDQKGITNYKFGMKLDSFLKRPEIKIKDIEFMIPEVSSWSDLEKSILEMEIKYEGYIKRE LETIQWKNKYLDLAIPEDINYEMIAGLKKEAIQKLKSHKPMTLEKASQISGVDPSDVDLILYHIKGKKKQEVEIF >Mature_635_residues MIESKNQSFFPNRFDCVVVGAGHAGSEAAYISSKGGARTLLITMNLDTIGQMSCNPAIGGIAKGHMVREVDALGGIMGKM IDNTGIQFKMLNTSKGPSVWAPRAQAEKKEYQLKVKHTLEAEKNLSIRQDTVEELIIENDQVIGVRTGRGFEIFTNHVIL TTGTFLSSLVHIGTYQNENGRMCEPTVKGLSKSLAKYNLKLGRLKTGTPPRIHKNSVDLSVLTIQEGDSNPSPFSFSTDK ITRKQIPCFITYTNAETHKLIHENLNLSPMYSGQIQSTGPRYCPSIEDKVVRFADRERHQVFLEPEGYETSEIYLNGVST SLPEEVQWKLVRSLKGLENAEIVRPGYAIEYDYVDPTELKPTLETKKIKGLYHAGQINGTTGYEEAAAQGLVAAYSVLHS LRNLTPLLFKRSESYIGVLIDDLVHKGVEDPYRMFTSRAEHRLLLRQDNADQRLMKYGYDLGLVDQKSYDCMKEKYERVN SVREKIYQIPLKPSDKFQNLLDQKGITNYKFGMKLDSFLKRPEIKIKDIEFMIPEVSSWSDLEKSILEMEIKYEGYIKRE LETIQWKNKYLDLAIPEDINYEMIAGLKKEAIQKLKSHKPMTLEKASQISGVDPSDVDLILYHIKGKKKQEVEIF
Specific function: NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 [H]
COG id: COG0445
COG function: function code D; NAD/FAD-utilizing enzyme apparently involved in cell division
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MnmG family [H]
Homologues:
Organism=Homo sapiens, GI74024895, Length=642, Percent_Identity=40.4984423676012, Blast_Score=457, Evalue=1e-128, Organism=Homo sapiens, GI19882217, Length=667, Percent_Identity=38.9805097451274, Blast_Score=442, Evalue=1e-124, Organism=Homo sapiens, GI183227703, Length=682, Percent_Identity=38.8563049853372, Blast_Score=439, Evalue=1e-123, Organism=Escherichia coli, GI2367273, Length=620, Percent_Identity=49.0322580645161, Blast_Score=615, Evalue=1e-177, Organism=Caenorhabditis elegans, GI17534255, Length=625, Percent_Identity=38.24, Blast_Score=449, Evalue=1e-126, Organism=Saccharomyces cerevisiae, GI6321202, Length=626, Percent_Identity=42.1725239616613, Blast_Score=468, Evalue=1e-132, Organism=Drosophila melanogaster, GI24658174, Length=633, Percent_Identity=42.0221169036335, Blast_Score=476, Evalue=1e-134,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004416 - InterPro: IPR002218 - InterPro: IPR020595 [H]
Pfam domain/function: PF01134 GIDA [H]
EC number: NA
Molecular weight: Translated: 71947; Mature: 71947
Theoretical pI: Translated: 8.11; Mature: 8.11
Prosite motif: PS01280 GIDA_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIESKNQSFFPNRFDCVVVGAGHAGSEAAYISSKGGARTLLITMNLDTIGQMSCNPAIGG CCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCC IAKGHMVREVDALGGIMGKMIDNTGIQFKMLNTSKGPSVWAPRAQAEKKEYQLKVKHTLE CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHCCCHHEEEEEEEHHC AEKNLSIRQDTVEELIIENDQVIGVRTGRGFEIFTNHVILTTGTFLSSLVHIGTYQNENG HHCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEECCEEEEECHHHHHHHHHCCEECCCC RMCEPTVKGLSKSLAKYNLKLGRLKTGTPPRIHKNSVDLSVLTIQEGDSNPSPFSFSTDK CCCCHHHHHHHHHHHHHCCEECEECCCCCCCEECCCCCEEEEEEECCCCCCCCCCCCCCC ITRKQIPCFITYTNAETHKLIHENLNLSPMYSGQIQSTGPRYCPSIEDKVVRFADRERHQ HHHHCCCEEEEECCCHHHHHHHHCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCCCE VFLEPEGYETSEIYLNGVSTSLPEEVQWKLVRSLKGLENAEIVRPGYAIEYDYVDPTELK EEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEECCCEEEEECCCCCCCCC PTLETKKIKGLYHAGQINGTTGYEEAAAQGLVAAYSVLHSLRNLTPLLFKRSESYIGVLI CCHHHHHHHCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHH DDLVHKGVEDPYRMFTSRAEHRLLLRQDNADQRLMKYGYDLGLVDQKSYDCMKEKYERVN HHHHHCCCCCHHHHHHHHHHHEEEEECCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH SVREKIYQIPLKPSDKFQNLLDQKGITNYKFGMKLDSFLKRPEIKIKDIEFMIPEVSSWS HHHHHHHCCCCCCCHHHHHHHHHCCCCCEECCCCHHHHHCCCCCEEEEEEEECCCCCCHH DLEKSILEMEIKYEGYIKRELETIQWKNKYLDLAIPEDINYEMIAGLKKEAIQKLKSHKP HHHHHHHHEEEEECCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC MTLEKASQISGVDPSDVDLILYHIKGKKKQEVEIF CCHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCC >Mature Secondary Structure MIESKNQSFFPNRFDCVVVGAGHAGSEAAYISSKGGARTLLITMNLDTIGQMSCNPAIGG CCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCC IAKGHMVREVDALGGIMGKMIDNTGIQFKMLNTSKGPSVWAPRAQAEKKEYQLKVKHTLE CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHCCCHHEEEEEEEHHC AEKNLSIRQDTVEELIIENDQVIGVRTGRGFEIFTNHVILTTGTFLSSLVHIGTYQNENG HHCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEECCEEEEECHHHHHHHHHCCEECCCC RMCEPTVKGLSKSLAKYNLKLGRLKTGTPPRIHKNSVDLSVLTIQEGDSNPSPFSFSTDK CCCCHHHHHHHHHHHHHCCEECEECCCCCCCEECCCCCEEEEEEECCCCCCCCCCCCCCC ITRKQIPCFITYTNAETHKLIHENLNLSPMYSGQIQSTGPRYCPSIEDKVVRFADRERHQ HHHHCCCEEEEECCCHHHHHHHHCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCCCE VFLEPEGYETSEIYLNGVSTSLPEEVQWKLVRSLKGLENAEIVRPGYAIEYDYVDPTELK EEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEECCCEEEEECCCCCCCCC PTLETKKIKGLYHAGQINGTTGYEEAAAQGLVAAYSVLHSLRNLTPLLFKRSESYIGVLI CCHHHHHHHCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHH DDLVHKGVEDPYRMFTSRAEHRLLLRQDNADQRLMKYGYDLGLVDQKSYDCMKEKYERVN HHHHHCCCCCHHHHHHHHHHHEEEEECCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH SVREKIYQIPLKPSDKFQNLLDQKGITNYKFGMKLDSFLKRPEIKIKDIEFMIPEVSSWS HHHHHHHCCCCCCCHHHHHHHHHCCCCCEECCCCHHHHHCCCCCEEEEEEEECCCCCCHH DLEKSILEMEIKYEGYIKRELETIQWKNKYLDLAIPEDINYEMIAGLKKEAIQKLKSHKP HHHHHHHHEEEEECCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC MTLEKASQISGVDPSDVDLILYHIKGKKKQEVEIF CCHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA