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The map label for this gene is ycfH [C]

Identifier: 45659296

GI number: 45659296

Start: 4257126

End: 4257935

Strand: Reverse

Name: ycfH [C]

Synonym: LIC13481

Alternate gene names: 45659296

Gene position: 4257935-4257126 (Counterclockwise)

Preceding gene: 45659300

Following gene: 45659295

Centisome position: 99.55

GC content: 32.96

Gene sequence:

>810_bases
ATGGTTTCTATAGTTGATACACATTGTCACCTTGATATTATACAATCTCAGGGTTTAGAAATTGCAGATTCTCTAAAAAA
TGCTGCGGAATCTGGAGTAAAAAAAATTGTTCAGATTGGAATTGATCTTGAGAGTTCCATAAGAGCTCGATCCATTGCGA
ATGAATATTCAAATGATTCTTTAGAAATTCGGTATTCGATTGGTTGTCATCCGACGGAAACACATGAATTTCCTAATAAG
GAAGAAATCTTAAAATTCGTCTACGAGAACTTAGGTGATCCTAAACTTTCTGCAATCGGAGAAATCGGTTTAGATTATTA
TCATACCGCGGATACTAAAAAACAACAAAAGGATATTCTCGAATCATTTTTAGAATGTTCTTCTAAAAGTGGATTGCCTG
TTGTAATTCATTCGAGGGATGCAAAAGAAGATACAATTTCCATTTTGAAAAATTTTCGTGATCAAGCTTTTGGTGTGATC
CATTGTTTTACTTACGACTATCTTACTGCAAAAACGTTAGTCGATATAGGTTATTATATTTCTTTTTCTGGAATTGTGGC
TTTTAAAAATGCGACAGAAATTCAAGAAGCAGCTCAAAAGCTTCCTTTAGAATGTATCTTAATTGAAACGGATGCTCCTT
TTTTGGCCCCACCTCCTTTTCGAGGAAAAAGAAACGAACCTTCTTATATGAAATTTATTTTGGATAAAATGTTTTCTCTT
AAAAAAGAATCTAACTCAGATGTGGAAAATAAACTTTTTGAAAACAGCATTAAATTTATGAATCGTAAGGCGTACCACTA
CAATGCTTGA

Upstream 100 bases:

>100_bases
GTTTTCAGCCGAGTCGTTTTACCTATCTGAAGAGATCTTAAAAAATCTCTTTTCAGTCAATCGAATTCACAAAAAGTGAC
TCACTAAAACCGGATTTCTA

Downstream 100 bases:

>100_bases
TTTGCGTTATATCACTGAAAATACAGAAGATCTCAAAAAAGTTTTAGAACTCAGAGGTTTTAAAGAAATTGGAATCATTG
ACGAACTCAAATCGATTATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MVSIVDTHCHLDIIQSQGLEIADSLKNAAESGVKKIVQIGIDLESSIRARSIANEYSNDSLEIRYSIGCHPTETHEFPNK
EEILKFVYENLGDPKLSAIGEIGLDYYHTADTKKQQKDILESFLECSSKSGLPVVIHSRDAKEDTISILKNFRDQAFGVI
HCFTYDYLTAKTLVDIGYYISFSGIVAFKNATEIQEAAQKLPLECILIETDAPFLAPPPFRGKRNEPSYMKFILDKMFSL
KKESNSDVENKLFENSIKFMNRKAYHYNA

Sequences:

>Translated_269_residues
MVSIVDTHCHLDIIQSQGLEIADSLKNAAESGVKKIVQIGIDLESSIRARSIANEYSNDSLEIRYSIGCHPTETHEFPNK
EEILKFVYENLGDPKLSAIGEIGLDYYHTADTKKQQKDILESFLECSSKSGLPVVIHSRDAKEDTISILKNFRDQAFGVI
HCFTYDYLTAKTLVDIGYYISFSGIVAFKNATEIQEAAQKLPLECILIETDAPFLAPPPFRGKRNEPSYMKFILDKMFSL
KKESNSDVENKLFENSIKFMNRKAYHYNA
>Mature_269_residues
MVSIVDTHCHLDIIQSQGLEIADSLKNAAESGVKKIVQIGIDLESSIRARSIANEYSNDSLEIRYSIGCHPTETHEFPNK
EEILKFVYENLGDPKLSAIGEIGLDYYHTADTKKQQKDILESFLECSSKSGLPVVIHSRDAKEDTISILKNFRDQAFGVI
HCFTYDYLTAKTLVDIGYYISFSGIVAFKNATEIQEAAQKLPLECILIETDAPFLAPPPFRGKRNEPSYMKFILDKMFSL
KKESNSDVENKLFENSIKFMNRKAYHYNA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=275, Percent_Identity=29.4545454545455, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI225903424, Length=224, Percent_Identity=29.9107142857143, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI225903439, Length=223, Percent_Identity=30.4932735426009, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI110349730, Length=180, Percent_Identity=29.4444444444444, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI110349734, Length=180, Percent_Identity=28.8888888888889, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI226061853, Length=185, Percent_Identity=28.1081081081081, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1787342, Length=241, Percent_Identity=37.344398340249, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI87082439, Length=259, Percent_Identity=29.3436293436293, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI48994985, Length=227, Percent_Identity=30.3964757709251, Blast_Score=110, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17559024, Length=203, Percent_Identity=28.0788177339901, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17565396, Length=218, Percent_Identity=29.8165137614679, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17543026, Length=256, Percent_Identity=24.609375, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI221330018, Length=236, Percent_Identity=28.8135593220339, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24586117, Length=236, Percent_Identity=28.8135593220339, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24648690, Length=264, Percent_Identity=26.5151515151515, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30450; Mature: 30450

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSIVDTHCHLDIIQSQGLEIADSLKNAAESGVKKIVQIGIDLESSIRARSIANEYSNDS
CCEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
LEIRYSIGCHPTETHEFPNKEEILKFVYENLGDPKLSAIGEIGLDYYHTADTKKQQKDIL
EEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCEECCCCHHHHHHHH
ESFLECSSKSGLPVVIHSRDAKEDTISILKNFRDQAFGVIHCFTYDYLTAKTLVDIGYYI
HHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHE
SFSGIVAFKNATEIQEAAQKLPLECILIETDAPFLAPPPFRGKRNEPSYMKFILDKMFSL
EECCEEEECCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
KKESNSDVENKLFENSIKFMNRKAYHYNA
HCCCCCCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MVSIVDTHCHLDIIQSQGLEIADSLKNAAESGVKKIVQIGIDLESSIRARSIANEYSNDS
CCEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
LEIRYSIGCHPTETHEFPNKEEILKFVYENLGDPKLSAIGEIGLDYYHTADTKKQQKDIL
EEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCEECCCCHHHHHHHH
ESFLECSSKSGLPVVIHSRDAKEDTISILKNFRDQAFGVIHCFTYDYLTAKTLVDIGYYI
HHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHE
SFSGIVAFKNATEIQEAAQKLPLECILIETDAPFLAPPPFRGKRNEPSYMKFILDKMFSL
EECCEEEECCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
KKESNSDVENKLFENSIKFMNRKAYHYNA
HCCCCCCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]