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The map label for this gene is yebA [H]

Identifier: 45659184

GI number: 45659184

Start: 4127456

End: 4128466

Strand: Direct

Name: yebA [H]

Synonym: LIC13365

Alternate gene names: 45659184

Gene position: 4127456-4128466 (Clockwise)

Preceding gene: 45659178

Following gene: 45659185

Centisome position: 96.5

GC content: 35.41

Gene sequence:

>1011_bases
TTGGATCGGGAGTCTCGGTTACAAGCATTTCTGTCTCTTTTTTTGCGTCATTGTTTTTTTAGAATCAACCGATTCTACAC
GTATAAGACCATGAAACCTTCTCTCAAGTATCCAATTGAAATCGTACTATTCCTTTTCACGGTTCTTTTTTTTAACAGTC
GAATCAATTCCAGTCAAAAACCAGAACTTTTGAAAAACTTAGATTATAATAATCAATCCGTAAAACGACTTAGGGAAGAC
ATTAAAAATAATCTGAAAGTTTCTATTTCCAACTTGGAAAGATCGGAATTAACTTCGCTTGAATTTTATAGATACGTCGT
AAAAAAAGAAGACAACTTTTTTAAAATTATGGCTAGAACCGGAATGGATATAGATACAATTTCATCGGTAAATAGCCTTG
CTTCTCCTTATGATATTTATCCCGGAATGGAACTTTTAATTCCTAACATGCGCGGCGTTTATGATTCGGATGAAAGAGAA
AACTCTTTTTTAATTCGGAAAAAACTTTCCAAAAAATATAAACTTGCGGAGAAGTTTATCTCTTTTGATGAAGATAAAAA
ACTTTGGTTCATTCCAGGAAAGGGACTTCCCAAAGAAGAAAGATCTTTTTTTTACGGAGTAGCGTTTTATCGTCCATTAG
GAAGCGAGGGAATTATTTCTTCTCGTTTCGGAAAAAGGAAAGATCCGTTTACTAGAAAAGAAACCTTTCACGGAGGATTG
GATATGGCAGCGGAAGAAGGAACTCCGGTTTATGCTTCTGCTGACGGAGAAGTTTATTTTTCTGATAAAAAGGGAGGTTA
TGGAAATCTGATTATACTAGGTCATAAATTAGGATATGAAACTTTATACGGACATCTAAGTTCTATATCCGTTCGTCCGG
GCGAAAAAGTTCATAAAGGTCAAAAGATCGGAGAAGTCGGTCAAACCGGAAGAGCCACCGGAAATCATTTACACTTCGAG
GTTAGAAGATTCAACCAAAGACAAAAACCGATTTTTAGAGACCATGTTTAA

Upstream 100 bases:

>100_bases
ACATACGTTCCAAGAATCAAAACAAAAAGTTGTTGAAAGGCGATTAAAATCGGTTCGAAAGGTTTCTTTTGCGAATTGCC
AATATTTTCTAAGGATTCCA

Downstream 100 bases:

>100_bases
AAGAATTGTAATATTCCTTTTTATTCTTATTTTTCTTTCTTTATCCTTCTTGATTTTTTTATTTTTACGTTCAAGTAAGA
ATACAAATGAATCTATCACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MDRESRLQAFLSLFLRHCFFRINRFYTYKTMKPSLKYPIEIVLFLFTVLFFNSRINSSQKPELLKNLDYNNQSVKRLRED
IKNNLKVSISNLERSELTSLEFYRYVVKKEDNFFKIMARTGMDIDTISSVNSLASPYDIYPGMELLIPNMRGVYDSDERE
NSFLIRKKLSKKYKLAEKFISFDEDKKLWFIPGKGLPKEERSFFYGVAFYRPLGSEGIISSRFGKRKDPFTRKETFHGGL
DMAAEEGTPVYASADGEVYFSDKKGGYGNLIILGHKLGYETLYGHLSSISVRPGEKVHKGQKIGEVGQTGRATGNHLHFE
VRRFNQRQKPIFRDHV

Sequences:

>Translated_336_residues
MDRESRLQAFLSLFLRHCFFRINRFYTYKTMKPSLKYPIEIVLFLFTVLFFNSRINSSQKPELLKNLDYNNQSVKRLRED
IKNNLKVSISNLERSELTSLEFYRYVVKKEDNFFKIMARTGMDIDTISSVNSLASPYDIYPGMELLIPNMRGVYDSDERE
NSFLIRKKLSKKYKLAEKFISFDEDKKLWFIPGKGLPKEERSFFYGVAFYRPLGSEGIISSRFGKRKDPFTRKETFHGGL
DMAAEEGTPVYASADGEVYFSDKKGGYGNLIILGHKLGYETLYGHLSSISVRPGEKVHKGQKIGEVGQTGRATGNHLHFE
VRRFNQRQKPIFRDHV
>Mature_336_residues
MDRESRLQAFLSLFLRHCFFRINRFYTYKTMKPSLKYPIEIVLFLFTVLFFNSRINSSQKPELLKNLDYNNQSVKRLRED
IKNNLKVSISNLERSELTSLEFYRYVVKKEDNFFKIMARTGMDIDTISSVNSLASPYDIYPGMELLIPNMRGVYDSDERE
NSFLIRKKLSKKYKLAEKFISFDEDKKLWFIPGKGLPKEERSFFYGVAFYRPLGSEGIISSRFGKRKDPFTRKETFHGGL
DMAAEEGTPVYASADGEVYFSDKKGGYGNLIILGHKLGYETLYGHLSSISVRPGEKVHKGQKIGEVGQTGRATGNHLHFE
VRRFNQRQKPIFRDHV

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=176, Percent_Identity=36.3636363636364, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI87082174, Length=239, Percent_Identity=27.1966527196653, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1789099, Length=253, Percent_Identity=26.8774703557312, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082297, Length=139, Percent_Identity=34.5323741007194, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 39099; Mature: 39099

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRESRLQAFLSLFLRHCFFRINRFYTYKTMKPSLKYPIEIVLFLFTVLFFNSRINSSQK
CCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
PELLKNLDYNNQSVKRLREDIKNNLKVSISNLERSELTSLEFYRYVVKKEDNFFKIMART
CHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECC
GMDIDTISSVNSLASPYDIYPGMELLIPNMRGVYDSDERENSFLIRKKLSKKYKLAEKFI
CCCHHHHHHHHHHCCCCCCCCCHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
SFDEDKKLWFIPGKGLPKEERSFFYGVAFYRPLGSEGIISSRFGKRKDPFTRKETFHGGL
CCCCCCEEEEECCCCCCHHHHHEEEEEHEECCCCCCCCHHHHCCCCCCCCCHHHHHCCCC
DMAAEEGTPVYASADGEVYFSDKKGGYGNLIILGHKLGYETLYGHLSSISVRPGEKVHKG
CCCCCCCCCEEEECCCEEEEECCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCHHHHCC
QKIGEVGQTGRATGNHLHFEVRRFNQRQKPIFRDHV
CHHHHHCCCCCCCCCEEEEEEEHHCCCCCCCCCCCC
>Mature Secondary Structure
MDRESRLQAFLSLFLRHCFFRINRFYTYKTMKPSLKYPIEIVLFLFTVLFFNSRINSSQK
CCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
PELLKNLDYNNQSVKRLREDIKNNLKVSISNLERSELTSLEFYRYVVKKEDNFFKIMART
CHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECC
GMDIDTISSVNSLASPYDIYPGMELLIPNMRGVYDSDERENSFLIRKKLSKKYKLAEKFI
CCCHHHHHHHHHHCCCCCCCCCHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
SFDEDKKLWFIPGKGLPKEERSFFYGVAFYRPLGSEGIISSRFGKRKDPFTRKETFHGGL
CCCCCCEEEEECCCCCCHHHHHEEEEEHEECCCCCCCCHHHHCCCCCCCCCHHHHHCCCC
DMAAEEGTPVYASADGEVYFSDKKGGYGNLIILGHKLGYETLYGHLSSISVRPGEKVHKG
CCCCCCCCCEEEECCCEEEEECCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCHHHHCC
QKIGEVGQTGRATGNHLHFEVRRFNQRQKPIFRDHV
CHHHHHCCCCCCCCCEEEEEEEHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]