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The map label for this gene is yijO [C]

Identifier: 45659007

GI number: 45659007

Start: 3897338

End: 3898942

Strand: Reverse

Name: yijO [C]

Synonym: LIC13185

Alternate gene names: 45659007

Gene position: 3898942-3897338 (Counterclockwise)

Preceding gene: 45659008

Following gene: 45659006

Centisome position: 91.16

GC content: 31.28

Gene sequence:

>1605_bases
ATGTTTTTTTTCTTCATGAAATTCCAGCAAACTTTTATCAATTGTTTCTTATTTTTGATTTTATTCTTATCTTTTGTATT
ATCGAAGGAAATTCATTCTTCTCCTGTAGCCGAGATCTGCGAGTTTGATCAAATTGAATTTGCACTCGATCCTGATTTAT
CAAACGAAGTGCCTAAAGAACCTAAAAAGAGTCTCGTTTTTTTACCGAAAGAGAATTCGTTTTTAAAATTGGGTTTTATC
AAAGAATCGGTCTGGATTCGGTTTAACATCAAACAGTATCCAAGATCCAGATGTTTTTTGAGGATTCCACAAGTAACGTT
AGACGGAGCGGCGCTTTTTGCAAAATCTTCCGTTCAAATTACGGGTGATCGTTTTAGATATTCGGAAAGATTCGTAGACG
ATTATTATCCTGTTTTTTATTTGGAGCCTTTAGATATACAAAAAGAAAAAAATCAATATTATCTTTGGATCAAAACGTCT
TCTATTATCAACTTTCCAATTTTTTTGGAATCCGGTTTGGAATATCAAAAAGGAAATTATTATAGAAATCTTTTGATTCT
TTTTTTGCTCGTATTGAGTTTATTTATTATACTATTGATTGGTTTTATCTATCGCCAAACTCTTGATCCGGTTTATTTAA
GTATCATGGGATTTCTTGTGTTTATAACACTGGAAGGTTGGGTCTGTTTTGCAAACGGATATAAATATCTATGGCCTAAC
GTACCTCAATTTCAAAATATTACACCTACGTTATTTGCTTTTTTTGCTCTTGCTTGTTCCGTTTGCTTTATGGTTCAGTT
TCTTTCGCCTTCGGCTCTTCATAAAATTTTTCGTTTTCTGTTATTCGGAACTGTGATCGTAATTGTATGTTTGGCGATTT
TGTCCTCTTTCGTTTTGGATCGTGCTTTGGTCGTAAAAATATTCTCGTGGACATTTATTTTTGTTTCAGTTTTAGTTTTA
ATTTCTACTTTTTCCATAATAAAATCTTTTTCTCCTGCTAGAAAAATAATCCTATGTATGATTCCTATTATTGGAAGTGG
ATTAATTAGAATTTTATATTATTTAGATTTACTAAAATATAATGAATACTATGTGCACGCTTATTTATTATCTCTTCCTT
CGATTTATATAGTAATTACGGTAAGTCTTAGAGATCGAGAGAAATTTGTAAAAAGGAAATTTTTGAGTCGTGCTTATGAT
ATACGTCAGATGCAGGAAAAATTAAATCTTCCGGTTCAAGTAGTAGGTCAGAATAAAACTCCTTCACTTCAATTCAGTTT
AGATCATCTATTGAGAGTAGAACGAATTTTTAAAAATCCAGAATTAAGTAAAAAGGATTTTGCGGAAATTCTCAGGATTG
CTCCTAACGATTTAGATCGATTTGTTCAGGAATTTTCTAACCTTCAATCGTTTGAAATTTACATCAATCTATACAGAGTA
GAAGAAGCAAAACATCTTTTGAAGACTAGAAAGGATCTAAAATCTTCAGAAATTGCACATAGATCTGGTTTTGCTTCTGG
TAGAGAAATGGAAAAGTCTTTTAAAACCTTAACTGGAATGACTTCCTCCGAATATAAATTGATGTTATTTCCGGATTCTA
TTTAA

Upstream 100 bases:

>100_bases
TTGGGACAGACCTTTTGTAAAAATAGAAACGAGTTTAAGAGGCACGATTATTTGTAATGTGTCAGACTTTCTTTGATAAA
ACCTAACCAAATGGATTGAG

Downstream 100 bases:

>100_bases
AAAAATTATTACTGGGCTTACTTTCTAATTGAATGTTATAATTTAAAAAAAGATCGTTTGGGCCGCTACTGGATTTTAAA
TTAAATATCGATAATCTATA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator

Number of amino acids: Translated: 534; Mature: 534

Protein sequence:

>534_residues
MFFFFMKFQQTFINCFLFLILFLSFVLSKEIHSSPVAEICEFDQIEFALDPDLSNEVPKEPKKSLVFLPKENSFLKLGFI
KESVWIRFNIKQYPRSRCFLRIPQVTLDGAALFAKSSVQITGDRFRYSERFVDDYYPVFYLEPLDIQKEKNQYYLWIKTS
SIINFPIFLESGLEYQKGNYYRNLLILFLLVLSLFIILLIGFIYRQTLDPVYLSIMGFLVFITLEGWVCFANGYKYLWPN
VPQFQNITPTLFAFFALACSVCFMVQFLSPSALHKIFRFLLFGTVIVIVCLAILSSFVLDRALVVKIFSWTFIFVSVLVL
ISTFSIIKSFSPARKIILCMIPIIGSGLIRILYYLDLLKYNEYYVHAYLLSLPSIYIVITVSLRDREKFVKRKFLSRAYD
IRQMQEKLNLPVQVVGQNKTPSLQFSLDHLLRVERIFKNPELSKKDFAEILRIAPNDLDRFVQEFSNLQSFEIYINLYRV
EEAKHLLKTRKDLKSSEIAHRSGFASGREMEKSFKTLTGMTSSEYKLMLFPDSI

Sequences:

>Translated_534_residues
MFFFFMKFQQTFINCFLFLILFLSFVLSKEIHSSPVAEICEFDQIEFALDPDLSNEVPKEPKKSLVFLPKENSFLKLGFI
KESVWIRFNIKQYPRSRCFLRIPQVTLDGAALFAKSSVQITGDRFRYSERFVDDYYPVFYLEPLDIQKEKNQYYLWIKTS
SIINFPIFLESGLEYQKGNYYRNLLILFLLVLSLFIILLIGFIYRQTLDPVYLSIMGFLVFITLEGWVCFANGYKYLWPN
VPQFQNITPTLFAFFALACSVCFMVQFLSPSALHKIFRFLLFGTVIVIVCLAILSSFVLDRALVVKIFSWTFIFVSVLVL
ISTFSIIKSFSPARKIILCMIPIIGSGLIRILYYLDLLKYNEYYVHAYLLSLPSIYIVITVSLRDREKFVKRKFLSRAYD
IRQMQEKLNLPVQVVGQNKTPSLQFSLDHLLRVERIFKNPELSKKDFAEILRIAPNDLDRFVQEFSNLQSFEIYINLYRV
EEAKHLLKTRKDLKSSEIAHRSGFASGREMEKSFKTLTGMTSSEYKLMLFPDSI
>Mature_534_residues
MFFFFMKFQQTFINCFLFLILFLSFVLSKEIHSSPVAEICEFDQIEFALDPDLSNEVPKEPKKSLVFLPKENSFLKLGFI
KESVWIRFNIKQYPRSRCFLRIPQVTLDGAALFAKSSVQITGDRFRYSERFVDDYYPVFYLEPLDIQKEKNQYYLWIKTS
SIINFPIFLESGLEYQKGNYYRNLLILFLLVLSLFIILLIGFIYRQTLDPVYLSIMGFLVFITLEGWVCFANGYKYLWPN
VPQFQNITPTLFAFFALACSVCFMVQFLSPSALHKIFRFLLFGTVIVIVCLAILSSFVLDRALVVKIFSWTFIFVSVLVL
ISTFSIIKSFSPARKIILCMIPIIGSGLIRILYYLDLLKYNEYYVHAYLLSLPSIYIVITVSLRDREKFVKRKFLSRAYD
IRQMQEKLNLPVQVVGQNKTPSLQFSLDHLLRVERIFKNPELSKKDFAEILRIAPNDLDRFVQEFSNLQSFEIYINLYRV
EEAKHLLKTRKDLKSSEIAHRSGFASGREMEKSFKTLTGMTSSEYKLMLFPDSI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62599; Mature: 62599

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFFFMKFQQTFINCFLFLILFLSFVLSKEIHSSPVAEICEFDQIEFALDPDLSNEVPKE
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCCCCC
PKKSLVFLPKENSFLKLGFIKESVWIRFNIKQYPRSRCFLRIPQVTLDGAALFAKSSVQI
CCCCEEEEECCCCEEEEEEEEEEEEEEEEHHHCCCCCEEEEECCEEECCHHHHCCCCEEE
TGDRFRYSERFVDDYYPVFYLEPLDIQKEKNQYYLWIKTSSIINFPIFLESGLEYQKGNY
ECHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEECCEEECCEEEECCCCCCCCHH
YRNLLILFLLVLSLFIILLIGFIYRQTLDPVYLSIMGFLVFITLEGWVCFANGYKYLWPN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEECCEEEECCC
VPQFQNITPTLFAFFALACSVCFMVQFLSPSALHKIFRFLLFGTVIVIVCLAILSSFVLD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RALVVKIFSWTFIFVSVLVLISTFSIIKSFSPARKIILCMIPIIGSGLIRILYYLDLLKY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NEYYVHAYLLSLPSIYIVITVSLRDREKFVKRKFLSRAYDIRQMQEKLNLPVQVVGQNKT
CHHHHHHHHHHCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
PSLQFSLDHLLRVERIFKNPELSKKDFAEILRIAPNDLDRFVQEFSNLQSFEIYINLYRV
CCEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEEEEHH
EEAKHLLKTRKDLKSSEIAHRSGFASGREMEKSFKTLTGMTSSEYKLMLFPDSI
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCC
>Mature Secondary Structure
MFFFFMKFQQTFINCFLFLILFLSFVLSKEIHSSPVAEICEFDQIEFALDPDLSNEVPKE
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCCCCC
PKKSLVFLPKENSFLKLGFIKESVWIRFNIKQYPRSRCFLRIPQVTLDGAALFAKSSVQI
CCCCEEEEECCCCEEEEEEEEEEEEEEEEHHHCCCCCEEEEECCEEECCHHHHCCCCEEE
TGDRFRYSERFVDDYYPVFYLEPLDIQKEKNQYYLWIKTSSIINFPIFLESGLEYQKGNY
ECHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEECCEEECCEEEECCCCCCCCHH
YRNLLILFLLVLSLFIILLIGFIYRQTLDPVYLSIMGFLVFITLEGWVCFANGYKYLWPN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEECCEEEECCC
VPQFQNITPTLFAFFALACSVCFMVQFLSPSALHKIFRFLLFGTVIVIVCLAILSSFVLD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RALVVKIFSWTFIFVSVLVLISTFSIIKSFSPARKIILCMIPIIGSGLIRILYYLDLLKY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NEYYVHAYLLSLPSIYIVITVSLRDREKFVKRKFLSRAYDIRQMQEKLNLPVQVVGQNKT
CHHHHHHHHHHCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
PSLQFSLDHLLRVERIFKNPELSKKDFAEILRIAPNDLDRFVQEFSNLQSFEIYINLYRV
CCEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEEEEHH
EEAKHLLKTRKDLKSSEIAHRSGFASGREMEKSFKTLTGMTSSEYKLMLFPDSI
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA