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The map label for this gene is 45658926

Identifier: 45658926

GI number: 45658926

Start: 3795332

End: 3795775

Strand: Reverse

Name: 45658926

Synonym: LIC13103

Alternate gene names: NA

Gene position: 3795775-3795332 (Counterclockwise)

Preceding gene: 45658927

Following gene: 45658925

Centisome position: 88.74

GC content: 34.23

Gene sequence:

>444_bases
TTGAAAACTGGGGGAAATGGTATGGGATCAGAAGATTCACTTAACCTCGACGCCAAAGAAGTGGATTTTTCAATCAATGA
ATTGGACGTAGCCCTACAAAAAGAAGATCTCCCCGAAAACTTTCCAGAAAATGCCGTGATTTTAAAAATCAGCGGAGAAA
TTAATCTTTACTCTGCATACGCGCTTAAGGAAAAATTTTTCGATTTAATTGATCGAGGATTCATATTTATTTTTGTGAAT
ATGGAAAAAACTAGATATATTGATTCTTCCGGACTAGCCGTTTTTGTAAATACGCATACAAAGTTTGTGGAAAAAGGAAA
AGGTGGAATGGCAATATTTTCTCCTTCTTCTCACGTAAAAAAAATTTTAGAGCTTACAAAATTAAAATCCACTATTCGGG
TTGTTGATTCTTTGGCGGAGTCGATTAAGATTCTTTTAAATTAG

Upstream 100 bases:

>100_bases
AAAATATATTGTTTGAAAAAATAAAAACCCGTTACTTTGATAAATTCCAAAATGAACTAAAATTGTATTCGTTTAAAGTC
TCCGACGGGGTCAGAGAAAT

Downstream 100 bases:

>100_bases
ATTTTTCTATAGAATGAAAAGTAGAAAATTAGAATATTCGAATCATATAGAACGTCTTTTAAGTTGTAGAAAATGTCCTA
ATATGCAAGGGAATCCTGTA

Product: anti-sigma factor antagonist

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MKTGGNGMGSEDSLNLDAKEVDFSINELDVALQKEDLPENFPENAVILKISGEINLYSAYALKEKFFDLIDRGFIFIFVN
MEKTRYIDSSGLAVFVNTHTKFVEKGKGGMAIFSPSSHVKKILELTKLKSTIRVVDSLAESIKILLN

Sequences:

>Translated_147_residues
MKTGGNGMGSEDSLNLDAKEVDFSINELDVALQKEDLPENFPENAVILKISGEINLYSAYALKEKFFDLIDRGFIFIFVN
MEKTRYIDSSGLAVFVNTHTKFVEKGKGGMAIFSPSSHVKKILELTKLKSTIRVVDSLAESIKILLN
>Mature_147_residues
MKTGGNGMGSEDSLNLDAKEVDFSINELDVALQKEDLPENFPENAVILKISGEINLYSAYALKEKFFDLIDRGFIFIFVN
MEKTRYIDSSGLAVFVNTHTKFVEKGKGGMAIFSPSSHVKKILELTKLKSTIRVVDSLAESIKILLN

Specific function: Unknown

COG id: COG1366

COG function: function code T; Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16352; Mature: 16352

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS50801 STAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTGGNGMGSEDSLNLDAKEVDFSINELDVALQKEDLPENFPENAVILKISGEINLYSAY
CCCCCCCCCCCCCCCCCHHHHCCCCCHHEEEEECCCCCCCCCCCEEEEEECCCEEEEHHH
ALKEKFFDLIDRGFIFIFVNMEKTRYIDSSGLAVFVNTHTKFVEKGKGGMAIFSPSSHVK
HHHHHHHHHHCCCEEEEEEECCHHEEECCCCCEEEEECCHHHHHCCCCCEEEECCHHHHH
KILELTKLKSTIRVVDSLAESIKILLN
HHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKTGGNGMGSEDSLNLDAKEVDFSINELDVALQKEDLPENFPENAVILKISGEINLYSAY
CCCCCCCCCCCCCCCCCHHHHCCCCCHHEEEEECCCCCCCCCCCEEEEEECCCEEEEHHH
ALKEKFFDLIDRGFIFIFVNMEKTRYIDSSGLAVFVNTHTKFVEKGKGGMAIFSPSSHVK
HHHHHHHHHHCCCEEEEEEECCHHEEECCCCCEEEEECCHHHHHCCCCCEEEECCHHHHH
KILELTKLKSTIRVVDSLAESIKILLN
HHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA