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The map label for this gene is yfbE [C]

Identifier: 45658858

GI number: 45658858

Start: 3695236

End: 3696345

Strand: Reverse

Name: yfbE [C]

Synonym: LIC13031

Alternate gene names: 45658858

Gene position: 3696345-3695236 (Counterclockwise)

Preceding gene: 45658859

Following gene: 45658857

Centisome position: 86.42

GC content: 35.77

Gene sequence:

>1110_bases
TTGGACATGAGTAGCACCGAAACTGAAATTTTAGAAAAGAATTCTAAAAAAAAGACAGAAATTGAATTTCATAAGCCTAC
TCTTTCCAGAGAAGATTTGAAAACGGTTTTAGAATGTCTCGTGGAGGATCATCTCACAACTGGAAATGTAACTACACGTT
TTGAAAAAGCATTTGCTTCCACTTTCCGCTATAAACAAGTTATTTCCACAAATCATCTTACTTCTGCTTATCATCTCTCA
CTTCTGGCGTTGGATGTTCAAGCAGGGGATAAAGTCGCACTTTCTACATTTGCGTCCGTTTCAGCACTTGACGCCATTTT
TCTTTTAAAAGCGACTCCGGTTGTAATTGATCTGGATAAAAATTCTTTTCATCTAAATTCGGAAGAGCTGACGCAAAAAT
TAGCAGATTCTTCTATTAAAGCGATTATTTTAGATCATTCTTTTGGTTCTGTGGTAGATGCAAGACGTTACGATTTTAAA
GGAATTCCGGTCATCGAAGATATTTCTGAAGTTTTGGGTGCACAAAGTGCAACTTTTATTCCGGGGAAACAAGGAAGTCT
TGCTGTTTGTGGACTTTCAGTAGATCAAATGATCACAACTGGAAACGGTGCTATGATCATTACAGATCAAGAACCACTCG
CTAAAAAAATTCGAGCGATGAAAACAGGTAAAGAACCATACCAAAGAAAAGAGGGGCAACCCAAGTTAGACTATAATCTT
ATCGACTATCAAGCAGCGCTTGGAATTGAACAGCTTTCCAAAATTGGAATCATCTTAGAAAGAAAAAGAAAAATCGCGCA
AGTTTATTTACAGTCTATCTCAGGAACTTCAGTTAAAACTTGGTATGGAGATCCAAATTTAGATACATTCAATCGTTTTA
TTATTCTTGCTCCTGGAAGTTACGAACAAGTAGAAAGATATTTTCGCTCTTTACAGATTGGAACTCAAAGAGTAATGGAA
GAACCAATTCATCATATTTTAGAACTTTCTAATGCAGATTTTCCAAATGGAGAAAGGCTCTTTCAAAGAGGCCATTGTAT
TCCAATTTACCCTAATTTAACAAAAGATAATATTCAAAGGATTTCTCAGGCAATCCGTAGAATTTATTGA

Upstream 100 bases:

>100_bases
CCAATTGCAAACTATGTCTATAAGATGTAGAAAAAGGTCTTTACGAGATCGAATTCAAATACATAATGCGACATAATAAA
ATTATTAGAAACTGAGTTAG

Downstream 100 bases:

>100_bases
ACGATTACGAGTATTCTAAACTCAGAATCGGTTTTATAAGTTTATAAAAACTCATAAAATAAACGATAGGTCTTCGTGTA
GACGTTTTACAAAATACCAT

Product: aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MDMSSTETEILEKNSKKKTEIEFHKPTLSREDLKTVLECLVEDHLTTGNVTTRFEKAFASTFRYKQVISTNHLTSAYHLS
LLALDVQAGDKVALSTFASVSALDAIFLLKATPVVIDLDKNSFHLNSEELTQKLADSSIKAIILDHSFGSVVDARRYDFK
GIPVIEDISEVLGAQSATFIPGKQGSLAVCGLSVDQMITTGNGAMIITDQEPLAKKIRAMKTGKEPYQRKEGQPKLDYNL
IDYQAALGIEQLSKIGIILERKRKIAQVYLQSISGTSVKTWYGDPNLDTFNRFIILAPGSYEQVERYFRSLQIGTQRVME
EPIHHILELSNADFPNGERLFQRGHCIPIYPNLTKDNIQRISQAIRRIY

Sequences:

>Translated_369_residues
MDMSSTETEILEKNSKKKTEIEFHKPTLSREDLKTVLECLVEDHLTTGNVTTRFEKAFASTFRYKQVISTNHLTSAYHLS
LLALDVQAGDKVALSTFASVSALDAIFLLKATPVVIDLDKNSFHLNSEELTQKLADSSIKAIILDHSFGSVVDARRYDFK
GIPVIEDISEVLGAQSATFIPGKQGSLAVCGLSVDQMITTGNGAMIITDQEPLAKKIRAMKTGKEPYQRKEGQPKLDYNL
IDYQAALGIEQLSKIGIILERKRKIAQVYLQSISGTSVKTWYGDPNLDTFNRFIILAPGSYEQVERYFRSLQIGTQRVME
EPIHHILELSNADFPNGERLFQRGHCIPIYPNLTKDNIQRISQAIRRIY
>Mature_369_residues
MDMSSTETEILEKNSKKKTEIEFHKPTLSREDLKTVLECLVEDHLTTGNVTTRFEKAFASTFRYKQVISTNHLTSAYHLS
LLALDVQAGDKVALSTFASVSALDAIFLLKATPVVIDLDKNSFHLNSEELTQKLADSSIKAIILDHSFGSVVDARRYDFK
GIPVIEDISEVLGAQSATFIPGKQGSLAVCGLSVDQMITTGNGAMIITDQEPLAKKIRAMKTGKEPYQRKEGQPKLDYNL
IDYQAALGIEQLSKIGIILERKRKIAQVYLQSISGTSVKTWYGDPNLDTFNRFIILAPGSYEQVERYFRSLQIGTQRVME
EPIHHILELSNADFPNGERLFQRGHCIPIYPNLTKDNIQRISQAIRRIY

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=380, Percent_Identity=27.3684210526316, Blast_Score=120, Evalue=9e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 41430; Mature: 41430

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMSSTETEILEKNSKKKTEIEFHKPTLSREDLKTVLECLVEDHLTTGNVTTRFEKAFAS
CCCCCHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
TFRYKQVISTNHLTSAYHLSLLALDVQAGDKVALSTFASVSALDAIFLLKATPVVIDLDK
HHHHHHHHHHCCCCHHHEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHEECCCEEEEECC
NSFHLNSEELTQKLADSSIKAIILDHSFGSVVDARRYDFKGIPVIEDISEVLGAQSATFI
CCEECCHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCEEC
PGKQGSLAVCGLSVDQMITTGNGAMIITDQEPLAKKIRAMKTGKEPYQRKEGQPKLDYNL
CCCCCCEEEECCCHHHEEECCCCEEEEECCCHHHHHHHHHHCCCCHHHHCCCCCCCCCEE
IDYQAALGIEQLSKIGIILERKRKIAQVYLQSISGTSVKTWYGDPNLDTFNRFIILAPGS
EHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEECCCC
YEQVERYFRSLQIGTQRVMEEPIHHILELSNADFPNGERLFQRGHCIPIYPNLTKDNIQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEECCCCCHHHHHH
ISQAIRRIY
HHHHHHHCC
>Mature Secondary Structure
MDMSSTETEILEKNSKKKTEIEFHKPTLSREDLKTVLECLVEDHLTTGNVTTRFEKAFAS
CCCCCHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
TFRYKQVISTNHLTSAYHLSLLALDVQAGDKVALSTFASVSALDAIFLLKATPVVIDLDK
HHHHHHHHHHCCCCHHHEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHEECCCEEEEECC
NSFHLNSEELTQKLADSSIKAIILDHSFGSVVDARRYDFKGIPVIEDISEVLGAQSATFI
CCEECCHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCEEC
PGKQGSLAVCGLSVDQMITTGNGAMIITDQEPLAKKIRAMKTGKEPYQRKEGQPKLDYNL
CCCCCCEEEECCCHHHEEECCCCEEEEECCCHHHHHHHHHHCCCCHHHHCCCCCCCCCEE
IDYQAALGIEQLSKIGIILERKRKIAQVYLQSISGTSVKTWYGDPNLDTFNRFIILAPGS
EHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEECCCC
YEQVERYFRSLQIGTQRVMEEPIHHILELSNADFPNGERLFQRGHCIPIYPNLTKDNIQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEECCCCCHHHHHH
ISQAIRRIY
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]