Click here to switch to the map view.

The map label for this gene is 45658835

Identifier: 45658835

GI number: 45658835

Start: 3660678

End: 3661076

Strand: Reverse

Name: 45658835

Synonym: LIC13008

Alternate gene names: NA

Gene position: 3661076-3660678 (Counterclockwise)

Preceding gene: 45658836

Following gene: 45658834

Centisome position: 85.6

GC content: 36.09

Gene sequence:

>399_bases
ATGCGTATAAGATATATCACATTTCTTATTTTCATGATCCCAGCCATTCTAACAATCTCGGTTATTTTAGCTTATATAAT
TGTAATGCGTGCTGTCAGTAGAGAAACTTGTGAAAAAAATCTCCGAGGACTTTGGTATTTGACTTCTATAGGGAGTCGTT
GTGTTCTTGCTACTGAATGTTTTTATCGTGGCAACTGTTTGCCATCGTACGATGCAGTTACTAATTGCGAACGGCTTTTG
ATCGGCGAAGAAAGGAAATATGTGTATTTACAGTTGGGAATGCCTGTAAGAAGTGGAAGTGGTCATGAGTATTTTGACGG
AGGTGCTATGAATCGTTCTGAATTATCCGTTGAATTCAATCATAATCGATTAGTTAAAAAAAATTGTAGATTTGAATAG

Upstream 100 bases:

>100_bases
TGGAGTGTTGGAACAAAGAGTGTGCTCTGCGGGTAATCTGTCGTTGTACATCCGCTGCTTCAACTGAATTTTCACAAATA
ATTTTGCAAGGATTCAATAG

Downstream 100 bases:

>100_bases
TCTATCCTATTCTATATGAACGTAAATTCTGCCAATGTCGACTGAACATTTTTGTATCCAAACGAAAAGGAAAAATATAT
CCAGAATTTGCTTACAAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MRIRYITFLIFMIPAILTISVILAYIIVMRAVSRETCEKNLRGLWYLTSIGSRCVLATECFYRGNCLPSYDAVTNCERLL
IGEERKYVYLQLGMPVRSGSGHEYFDGGAMNRSELSVEFNHNRLVKKNCRFE

Sequences:

>Translated_132_residues
MRIRYITFLIFMIPAILTISVILAYIIVMRAVSRETCEKNLRGLWYLTSIGSRCVLATECFYRGNCLPSYDAVTNCERLL
IGEERKYVYLQLGMPVRSGSGHEYFDGGAMNRSELSVEFNHNRLVKKNCRFE
>Mature_132_residues
MRIRYITFLIFMIPAILTISVILAYIIVMRAVSRETCEKNLRGLWYLTSIGSRCVLATECFYRGNCLPSYDAVTNCERLL
IGEERKYVYLQLGMPVRSGSGHEYFDGGAMNRSELSVEFNHNRLVKKNCRFE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15276; Mature: 15276

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
8.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIRYITFLIFMIPAILTISVILAYIIVMRAVSRETCEKNLRGLWYLTSIGSRCVLATEC
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEHHH
FYRGNCLPSYDAVTNCERLLIGEERKYVYLQLGMPVRSGSGHEYFDGGAMNRSELSVEFN
HHCCCCCCCCHHHHHHHHHEECCCCCEEEEEECCEEECCCCCCCCCCCCCCCCEEEEEEC
HNRLVKKNCRFE
CCEEECCCCCCC
>Mature Secondary Structure
MRIRYITFLIFMIPAILTISVILAYIIVMRAVSRETCEKNLRGLWYLTSIGSRCVLATEC
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEHHH
FYRGNCLPSYDAVTNCERLLIGEERKYVYLQLGMPVRSGSGHEYFDGGAMNRSELSVEFN
HHCCCCCCCCHHHHHHHHHEECCCCCEEEEEECCEEECCCCCCCCCCCCCCCCEEEEEEC
HNRLVKKNCRFE
CCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA