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The map label for this gene is yebC [C]

Identifier: 45658716

GI number: 45658716

Start: 3488641

End: 3489390

Strand: Reverse

Name: yebC [C]

Synonym: LIC12886

Alternate gene names: 45658716

Gene position: 3489390-3488641 (Counterclockwise)

Preceding gene: 45658718

Following gene: 45658715

Centisome position: 81.58

GC content: 40.67

Gene sequence:

>750_bases
ATGTCCGGACATTCGAAATGGGCTACGATCAAACGTAAAAAAGACGCGATCGATTCCAAACGTGGAGCCATTTTTACAAG
AGTGGGAAAAGAAATTACTGTAGCTGCAAAGATGGGCGGAGGGGATCCGGAAGGAAATCCAAGACTTAGACTTGCAATTT
TAAAAGCAAAATCTGTGAATATGCCCAAAGACAATATTGAAAGGGCTATTCGAAAAGGAACCGGAGAATTAGAAGGTGTC
ACATACGAGGAATGTCTTTACGAATGTTTCGGTCCCGGTGGAATTGCGATTATGGTTTCTGCGGTGACAGATAAAAAGTC
CAGAACCACACCTGAGATCAAAAGTATTCTTACAAAATTAGGGGGATCTCTCGCTACTTCTGGATCCGTTAGTCGTCTTT
TCGAGAAAAAAGGAGTAATCGTTTTAGAATCTTCTCAAATTAGCGAAGATGAACTCGTTGATGTTGCCGTTGGTGGAGGC
GCGGAAGACGTGATTAATGAAGGTGACGTCTATCGTGTGATTAGTGTTCCCGATAATTATGAAACCGTTTTACACGCATT
AAATGAGAAAGGACTTAAGTCGGAAGAATCGGAAATACGTTATATTCCTTTGGTGAGTTCTGAAATTGCAGATAAGGAAG
TTGCAGAAAAAATAATGAAGTTGATCGATCAACTAGATGGGCATGATGACGTGACTTCTGTGACTTCCAATTTTGAGTTG
GCAAGCTCTCTTGAAAAAGAATTTGAATGA

Upstream 100 bases:

>100_bases
TAGTCGGTTCATGAAAAGGATGGACAGGATGTCTTTTTTTTGATCTTTGGAAAGTATCATTCAGTTTGATTCAATTATTC
AAAGTAGGGGATAAGCAATC

Downstream 100 bases:

>100_bases
TTTTAGAATTTTTGAAAAATGGATTTTCCGTTTCTGTCGGTTTTATTAAAGCGATTTTATTAATCTGAATTATGGAATTT
TTCAACTACACTTTTTATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MSGHSKWATIKRKKDAIDSKRGAIFTRVGKEITVAAKMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIRKGTGELEGV
TYEECLYECFGPGGIAIMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSRLFEKKGVIVLESSQISEDELVDVAVGGG
AEDVINEGDVYRVISVPDNYETVLHALNEKGLKSEESEIRYIPLVSSEIADKEVAEKIMKLIDQLDGHDDVTSVTSNFEL
ASSLEKEFE

Sequences:

>Translated_249_residues
MSGHSKWATIKRKKDAIDSKRGAIFTRVGKEITVAAKMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIRKGTGELEGV
TYEECLYECFGPGGIAIMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSRLFEKKGVIVLESSQISEDELVDVAVGGG
AEDVINEGDVYRVISVPDNYETVLHALNEKGLKSEESEIRYIPLVSSEIADKEVAEKIMKLIDQLDGHDDVTSVTSNFEL
ASSLEKEFE
>Mature_248_residues
SGHSKWATIKRKKDAIDSKRGAIFTRVGKEITVAAKMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIRKGTGELEGVT
YEECLYECFGPGGIAIMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSRLFEKKGVIVLESSQISEDELVDVAVGGGA
EDVINEGDVYRVISVPDNYETVLHALNEKGLKSEESEIRYIPLVSSEIADKEVAEKIMKLIDQLDGHDDVTSVTSNFELA
SSLEKEFE

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family [H]

Homologues:

Organism=Homo sapiens, GI27545315, Length=248, Percent_Identity=31.8548387096774, Blast_Score=113, Evalue=2e-25,
Organism=Escherichia coli, GI1788171, Length=242, Percent_Identity=43.801652892562, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI1788294, Length=235, Percent_Identity=31.9148936170213, Blast_Score=105, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17556100, Length=244, Percent_Identity=25.4098360655738, Blast_Score=69, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6321458, Length=263, Percent_Identity=33.0798479087452, Blast_Score=111, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002876
- InterPro:   IPR017856 [H]

Pfam domain/function: PF01709 DUF28 [H]

EC number: NA

Molecular weight: Translated: 26976; Mature: 26845

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGHSKWATIKRKKDAIDSKRGAIFTRVGKEITVAAKMGGGDPEGNPRLRLAILKAKSVN
CCCCCHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEECCCCCCCCCCEEEEEEEEECCCC
MPKDNIERAIRKGTGELEGVTYEECLYECFGPGGIAIMVSAVTDKKSRTTPEIKSILTKL
CCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEHHCCCCCCCHHHHHHHHHH
GGSLATSGSVSRLFEKKGVIVLESSQISEDELVDVAVGGGAEDVINEGDVYRVISVPDNY
CCCCCCCCHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCHHHHCCCCCEEEEEECCCCH
ETVLHALNEKGLKSEESEIRYIPLVSSEIADKEVAEKIMKLIDQLDGHDDVTSVTSNFEL
HHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHH
ASSLEKEFE
HHHHHHHCC
>Mature Secondary Structure 
SGHSKWATIKRKKDAIDSKRGAIFTRVGKEITVAAKMGGGDPEGNPRLRLAILKAKSVN
CCCCHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEECCCCCCCCCCEEEEEEEEECCCC
MPKDNIERAIRKGTGELEGVTYEECLYECFGPGGIAIMVSAVTDKKSRTTPEIKSILTKL
CCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEHHCCCCCCCHHHHHHHHHH
GGSLATSGSVSRLFEKKGVIVLESSQISEDELVDVAVGGGAEDVINEGDVYRVISVPDNY
CCCCCCCCHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCHHHHCCCCCEEEEEECCCCH
ETVLHALNEKGLKSEESEIRYIPLVSSEIADKEVAEKIMKLIDQLDGHDDVTSVTSNFEL
HHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHH
ASSLEKEFE
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA