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The map label for this gene is ydhM [C]

Identifier: 45658629

GI number: 45658629

Start: 3404779

End: 3405393

Strand: Direct

Name: ydhM [C]

Synonym: LIC12798

Alternate gene names: 45658629

Gene position: 3404779-3405393 (Clockwise)

Preceding gene: 45658628

Following gene: 45658631

Centisome position: 79.6

GC content: 38.7

Gene sequence:

>615_bases
ATGAAAACTCAACCGCGTAAAAAGAAAGAATCCGGAACTGGAGTTCGGGAAAGAATTTTAGATACCGCTACTTCTCTTTT
TTACAAACAAGGTTTTTCCAGTACAGGTATGAGGCAAATCATTCAGGAATCCAATTCTGTTGCTGCAAGTCTCTACGATC
ACTACCCTTCTAAAAAAGAGTTGGGACTTGCGTATCTAGCTCGTCAGGAAGAAAAAACTCTTAGCGATCTTCAAAGTTTG
ATGGATCGTTATCCAGACCTAGGAGAATTTTTAAGAGCCTGGGTGATTCTCAAAGAAAAACAAATCCGTCACGGAGAATT
TGTAGGTTGTCCTTTTGCTGGTTTTGCAAGTCAAGTAATGGACTCCGATCCTGAATATACTGAATTTTTAAAAGACATCG
TAAACAAATGGATTCGTATGATCAGCGATTATCTGCAAAAGGCGATCGGATCGGGACAACTCAAAAGAAACATGGACATT
CAATACGTGGCGAGAAGAATTTTAATGGCATACCACGGTTCAATTACAATGTGGAGAATGACTCAAGAACTTCGTTTTAT
TCGTGAGATGGACGATTCTCTTCGTGAAATTGTAGAAGAATATAGAATCCTTTAA

Upstream 100 bases:

>100_bases
AGAACGTTCGTTCTGTTTTTTTACATCAATTATCCAAAGTCATTGACAGAAGATTTTTCCGATGGAAAAATGAACCTTAA
GAAATCGGTTACGTTCCTCT

Downstream 100 bases:

>100_bases
ATAAATTGCGTAAAAACTTTCCTTTTAAAGTTTTATAAATAGAAAAATTCTTATCTATATTAGAGTTGTTGAAAAATTTC
ATAGTGGCGATTAACAAAAC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Repressor

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MKTQPRKKKESGTGVRERILDTATSLFYKQGFSSTGMRQIIQESNSVAASLYDHYPSKKELGLAYLARQEEKTLSDLQSL
MDRYPDLGEFLRAWVILKEKQIRHGEFVGCPFAGFASQVMDSDPEYTEFLKDIVNKWIRMISDYLQKAIGSGQLKRNMDI
QYVARRILMAYHGSITMWRMTQELRFIREMDDSLREIVEEYRIL

Sequences:

>Translated_204_residues
MKTQPRKKKESGTGVRERILDTATSLFYKQGFSSTGMRQIIQESNSVAASLYDHYPSKKELGLAYLARQEEKTLSDLQSL
MDRYPDLGEFLRAWVILKEKQIRHGEFVGCPFAGFASQVMDSDPEYTEFLKDIVNKWIRMISDYLQKAIGSGQLKRNMDI
QYVARRILMAYHGSITMWRMTQELRFIREMDDSLREIVEEYRIL
>Mature_204_residues
MKTQPRKKKESGTGVRERILDTATSLFYKQGFSSTGMRQIIQESNSVAASLYDHYPSKKELGLAYLARQEEKTLSDLQSL
MDRYPDLGEFLRAWVILKEKQIRHGEFVGCPFAGFASQVMDSDPEYTEFLKDIVNKWIRMISDYLQKAIGSGQLKRNMDI
QYVARRILMAYHGSITMWRMTQELRFIREMDDSLREIVEEYRIL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23885; Mature: 23885

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTQPRKKKESGTGVRERILDTATSLFYKQGFSSTGMRQIIQESNSVAASLYDHYPSKKE
CCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
LGLAYLARQEEKTLSDLQSLMDRYPDLGEFLRAWVILKEKQIRHGEFVGCPFAGFASQVM
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
DSDPEYTEFLKDIVNKWIRMISDYLQKAIGSGQLKRNMDIQYVARRILMAYHGSITMWRM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCCHHHHHH
TQELRFIREMDDSLREIVEEYRIL
HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTQPRKKKESGTGVRERILDTATSLFYKQGFSSTGMRQIIQESNSVAASLYDHYPSKKE
CCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
LGLAYLARQEEKTLSDLQSLMDRYPDLGEFLRAWVILKEKQIRHGEFVGCPFAGFASQVM
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
DSDPEYTEFLKDIVNKWIRMISDYLQKAIGSGQLKRNMDIQYVARRILMAYHGSITMWRM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCCHHHHHH
TQELRFIREMDDSLREIVEEYRIL
HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA