| Definition | Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_005823 |
| Length | 4,277,185 |
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The map label for this gene is colA [H]
Identifier: 45658594
GI number: 45658594
Start: 3359762
End: 3362428
Strand: Direct
Name: colA [H]
Synonym: LIC12760
Alternate gene names: 45658594
Gene position: 3359762-3362428 (Clockwise)
Preceding gene: 45658592
Following gene: 45658596
Centisome position: 78.55
GC content: 35.4
Gene sequence:
>2667_bases ATGATAACGAATATAAAGTATAAGCTAGCAATAACGTTAAGTGTTCTTGTAACCTTTTCGTTAGGATGTAATAGCCAAAA TAATGGCTCTAAAAATGATCTTAGTTTGTTTGCAACAATGTTTGCTCAGGCTACACAACAAACTACAATGAGATCGACAA CAGTAAGCGTTAGCTCGTTAAACGAACTGATAGGTTTTAAACCTATTCAAGTAGAAAATGAGCAAGACTTTGACAGAATC GCAGATGGAAAAAAAAGAATTCTTGTTCCGTCGGTTATGACTTTCGGACCAAGTAATTCTTATTCGAATGGAACTGCACA AAATATAACTTCAAATAATTGTAATGGAAGTTACGTTGCACGTTTAAAACCGAAAGAATTCGTCAGATTCTTGGAAACAC ATGATATAAATTGTGTGGATAAATTTGTTTGGAATTACGATCAGTATTCGGACTATATTTATTCACAAGAGAACATGCTT GAAGTAGTCAATCGACTAAACGATCTTGCTCCTTTTTACAACGGTAACAACGATTTGAACTTTATACAATTGTTCAGAAT GTTTTGGGCCGGATATTATGTAAAACATTCTCACCCTTCCCTCCCATTTGATACAAACCAAATCTCTCAGGCTTTAGTTA CTCCAATGCAGATTTTTGCAAGTAGTGCACACTTCTTAGATGGAACCAACGATGCCGGAAAAGTTTTAGAGTTCTTCTTT ACAGTAGCGGATAGTACAAAAATTGGACATACGATTTATCCACGTATCCTTTCTTTTCTTGAAGCTACTATAAACGATCC ACAAAGATTAAGAAACAATCTTTCTCAGGCCATCGCTTTGAATGCTGTTTTTAGATTGTTTCAACGTCATATCCATTCAA ACAGCAACGAATTCCTTACAATGATCGATTATAGATTGATTAGTAAACTGAGAAGACTTGCTCTTGATACAAGTCTCAAC ACAGATTCTCAAGTCTGGATCATCAACAATGCGATATTTGGTTTGGATAGGATTTATGAATATCTTCCTAGCTTTCAACC AGTGATTGCTTCAGTTATGACTGATGTTTTAGAAACGTATCCATACATTTCTGAACCGTATCTTCTAGGAATCAAAGCGT TAACTCGACATTCGGACTGTGCGAATTTACGGATCGGACGAATTTGTTTGAGCGATATCAAAGAAACTGTGAAAAAGGCG GTTTTGTCAAATACATATTATTTTGACGATAAAACACAAATCGTACACACAGCTCTATCAATCGATGAAATTCAACCTCT ATATCACGCTCTTAAACAGGTAGAATCTCAATTTTTCCGTTTGATAGGAATTCATGCTCCCGTGTCTGGAGATACGACGG ATTCAATTACCATGTATGTGTATAAATCTAGAAAGGATTACGAAACTTTTCATCCTTTTCTATTCGATCTTTCTACAGAT AATGGTGGGATCTACATAGAACGAGACAAAACGCTCTATACATATCAACGTACTCCTGCAGAAAGTATATATACTCTCGA AGAATTACTACGCCACGAATATAGTCATTATCTTGTAGGCAGATTTATAATTCCAGGTTTATGGTCTCAAACTTCTGCTC ACGATAATGAAAGACTCACTTGGTTTGAAGAAGGAATTGCAGAATTTCTAACCGGTAGTTCTTCAAGAGAAATTCATCCG CGTAAAAGTTTAATTTCTGAAATTAAAAGAGACGGTTCTTCTAGAATGGACGTTTCAAAAATCCTAACGGCTCGTTATGG AGATTTCAAATTTTATAGATACTCGGGTAATTTCTTCAATTATCTTTACACCTATAAAAAAGATACCCTGAAAGATTTAA TTAGTGCATTACGTGATTCTAATATTCAAACATTTGATTTTTTAATTGATCAAATGTCTCACGACACAGGGCTTAATACT TCGTTTCAGGCATATTTAGATTACCTAGTTAGCAACGTAGACAATCTTACAGATCCATCTACGCCTGCTCCGGATTTAGC AAATTTGTCTACCAATGATCCGAAAGTCATTCGATCTTTTTTTAGAAAGACCGAAACAGGACTTAAGGCAAAATGTACAA CCGCCGCATTCGGACTCAACAGTCGTTTTTCTTGTAGAGGTTTGATATTTGGAAACGCTACCTATAGTCCAGACTGGAAC TCTGCGTGGTCTGATTTCAATTCAAGGATCAACGATCTTATGTCTACCTTGGAAAGCAGCGGTGTGAATAACTTTCAGAG TATGAATTGTAGAATAGGAGAGATTCGTTTTGATAAACATTTAAATCTATTTCGACCTTTTACAATTTATTCTTGTGAAG GACCACTGGCATACCGTTCTCGAATTTCTTATAGACATCCACAACGGGGTCAAACTGATTTTCGAAACACAAGAATAGGT ATACATTCTACTTGTTTTGCAACTCCATCTAATGGATCAAGCACAACTTGTAACACTCCAATAGTTACGAATGCATTTTC GAATACAGCTACTTATGAAGAAATGTATCAAAAACTAAACGGAGAATTGAATGAATTGAAGTCGGAAGTCTATACAATGA GACCTTCATTTTATAAAAAACTCGATTGCAATTTCGATTCTATTGATACAATCCATTTACCAGACGGTAGAAAGTATTTA GCTGCGAATTCAAGTTGTAATTTCTAA
Upstream 100 bases:
>100_bases TTTTTATAAATATTTTTATAAAAAAAATTTTTCTTTTATAAAAAGATAATAATTTTATTCACGGAAAAATATAAAAACTA AAAGGAAAAAGAATATAAAA
Downstream 100 bases:
>100_bases GTGACCTCGTCCAGTTCATCCAGTCCATTTCGTTTGGATGAACTGGACATATATTCTGTTTTTAGAATATACTAAATAAC CGTCTTTGATACAATCTACA
Product: collagenase precursor
Products: NA
Alternate protein names: 120 kDa collagenase [H]
Number of amino acids: Translated: 888; Mature: 888
Protein sequence:
>888_residues MITNIKYKLAITLSVLVTFSLGCNSQNNGSKNDLSLFATMFAQATQQTTMRSTTVSVSSLNELIGFKPIQVENEQDFDRI ADGKKRILVPSVMTFGPSNSYSNGTAQNITSNNCNGSYVARLKPKEFVRFLETHDINCVDKFVWNYDQYSDYIYSQENML EVVNRLNDLAPFYNGNNDLNFIQLFRMFWAGYYVKHSHPSLPFDTNQISQALVTPMQIFASSAHFLDGTNDAGKVLEFFF TVADSTKIGHTIYPRILSFLEATINDPQRLRNNLSQAIALNAVFRLFQRHIHSNSNEFLTMIDYRLISKLRRLALDTSLN TDSQVWIINNAIFGLDRIYEYLPSFQPVIASVMTDVLETYPYISEPYLLGIKALTRHSDCANLRIGRICLSDIKETVKKA VLSNTYYFDDKTQIVHTALSIDEIQPLYHALKQVESQFFRLIGIHAPVSGDTTDSITMYVYKSRKDYETFHPFLFDLSTD NGGIYIERDKTLYTYQRTPAESIYTLEELLRHEYSHYLVGRFIIPGLWSQTSAHDNERLTWFEEGIAEFLTGSSSREIHP RKSLISEIKRDGSSRMDVSKILTARYGDFKFYRYSGNFFNYLYTYKKDTLKDLISALRDSNIQTFDFLIDQMSHDTGLNT SFQAYLDYLVSNVDNLTDPSTPAPDLANLSTNDPKVIRSFFRKTETGLKAKCTTAAFGLNSRFSCRGLIFGNATYSPDWN SAWSDFNSRINDLMSTLESSGVNNFQSMNCRIGEIRFDKHLNLFRPFTIYSCEGPLAYRSRISYRHPQRGQTDFRNTRIG IHSTCFATPSNGSSTTCNTPIVTNAFSNTATYEEMYQKLNGELNELKSEVYTMRPSFYKKLDCNFDSIDTIHLPDGRKYL AANSSCNF
Sequences:
>Translated_888_residues MITNIKYKLAITLSVLVTFSLGCNSQNNGSKNDLSLFATMFAQATQQTTMRSTTVSVSSLNELIGFKPIQVENEQDFDRI ADGKKRILVPSVMTFGPSNSYSNGTAQNITSNNCNGSYVARLKPKEFVRFLETHDINCVDKFVWNYDQYSDYIYSQENML EVVNRLNDLAPFYNGNNDLNFIQLFRMFWAGYYVKHSHPSLPFDTNQISQALVTPMQIFASSAHFLDGTNDAGKVLEFFF TVADSTKIGHTIYPRILSFLEATINDPQRLRNNLSQAIALNAVFRLFQRHIHSNSNEFLTMIDYRLISKLRRLALDTSLN TDSQVWIINNAIFGLDRIYEYLPSFQPVIASVMTDVLETYPYISEPYLLGIKALTRHSDCANLRIGRICLSDIKETVKKA VLSNTYYFDDKTQIVHTALSIDEIQPLYHALKQVESQFFRLIGIHAPVSGDTTDSITMYVYKSRKDYETFHPFLFDLSTD NGGIYIERDKTLYTYQRTPAESIYTLEELLRHEYSHYLVGRFIIPGLWSQTSAHDNERLTWFEEGIAEFLTGSSSREIHP RKSLISEIKRDGSSRMDVSKILTARYGDFKFYRYSGNFFNYLYTYKKDTLKDLISALRDSNIQTFDFLIDQMSHDTGLNT SFQAYLDYLVSNVDNLTDPSTPAPDLANLSTNDPKVIRSFFRKTETGLKAKCTTAAFGLNSRFSCRGLIFGNATYSPDWN SAWSDFNSRINDLMSTLESSGVNNFQSMNCRIGEIRFDKHLNLFRPFTIYSCEGPLAYRSRISYRHPQRGQTDFRNTRIG IHSTCFATPSNGSSTTCNTPIVTNAFSNTATYEEMYQKLNGELNELKSEVYTMRPSFYKKLDCNFDSIDTIHLPDGRKYL AANSSCNF >Mature_888_residues MITNIKYKLAITLSVLVTFSLGCNSQNNGSKNDLSLFATMFAQATQQTTMRSTTVSVSSLNELIGFKPIQVENEQDFDRI ADGKKRILVPSVMTFGPSNSYSNGTAQNITSNNCNGSYVARLKPKEFVRFLETHDINCVDKFVWNYDQYSDYIYSQENML EVVNRLNDLAPFYNGNNDLNFIQLFRMFWAGYYVKHSHPSLPFDTNQISQALVTPMQIFASSAHFLDGTNDAGKVLEFFF TVADSTKIGHTIYPRILSFLEATINDPQRLRNNLSQAIALNAVFRLFQRHIHSNSNEFLTMIDYRLISKLRRLALDTSLN TDSQVWIINNAIFGLDRIYEYLPSFQPVIASVMTDVLETYPYISEPYLLGIKALTRHSDCANLRIGRICLSDIKETVKKA VLSNTYYFDDKTQIVHTALSIDEIQPLYHALKQVESQFFRLIGIHAPVSGDTTDSITMYVYKSRKDYETFHPFLFDLSTD NGGIYIERDKTLYTYQRTPAESIYTLEELLRHEYSHYLVGRFIIPGLWSQTSAHDNERLTWFEEGIAEFLTGSSSREIHP RKSLISEIKRDGSSRMDVSKILTARYGDFKFYRYSGNFFNYLYTYKKDTLKDLISALRDSNIQTFDFLIDQMSHDTGLNT SFQAYLDYLVSNVDNLTDPSTPAPDLANLSTNDPKVIRSFFRKTETGLKAKCTTAAFGLNSRFSCRGLIFGNATYSPDWN SAWSDFNSRINDLMSTLESSGVNNFQSMNCRIGEIRFDKHLNLFRPFTIYSCEGPLAYRSRISYRHPQRGQTDFRNTRIG IHSTCFATPSNGSSTTCNTPIVTNAFSNTATYEEMYQKLNGELNELKSEVYTMRPSFYKKLDCNFDSIDTIHLPDGRKYL AANSSCNF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PKD domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013510 - InterPro: IPR007280 - InterPro: IPR002169 - InterPro: IPR013661 - InterPro: IPR022409 - InterPro: IPR000601 [H]
Pfam domain/function: PF01752 Peptidase_M9; PF08453 Peptidase_M9_N; PF00801 PKD; PF04151 PPC [H]
EC number: =3.4.24.3 [H]
Molecular weight: Translated: 101603; Mature: 101603
Theoretical pI: Translated: 7.07; Mature: 7.07
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITNIKYKLAITLSVLVTFSLGCNSQNNGSKNDLSLFATMFAQATQQTTMRSTTVSVSSL CCCCEEEEHEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEHHHH NELIGFKPIQVENEQDFDRIADGKKRILVPSVMTFGPSNSYSNGTAQNITSNNCNGSYVA HHHHCCCCEEECCCCCHHHHHCCCCEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCEEE RLKPKEFVRFLETHDINCVDKFVWNYDQYSDYIYSQENMLEVVNRLNDLAPFYNGNNDLN EECHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHH FIQLFRMFWAGYYVKHSHPSLPFDTNQISQALVTPMQIFASSAHFLDGTNDAGKVLEFFF HHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH TVADSTKIGHTIYPRILSFLEATINDPQRLRNNLSQAIALNAVFRLFQRHIHSNSNEFLT HHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEH MIDYRLISKLRRLALDTSLNTDSQVWIINNAIFGLDRIYEYLPSFQPVIASVMTDVLETY HHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC PYISEPYLLGIKALTRHSDCANLRIGRICLSDIKETVKKAVLSNTYYFDDKTQIVHTALS CCCCCCHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHH IDEIQPLYHALKQVESQFFRLIGIHAPVSGDTTDSITMYVYKSRKDYETFHPFLFDLSTD HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEECCCCCHHHCCEEEEEECC NGGIYIERDKTLYTYQRTPAESIYTLEELLRHEYSHYLVGRFIIPGLWSQTSAHDNERLT CCCEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH WFEEGIAEFLTGSSSREIHPRKSLISEIKRDGSSRMDVSKILTARYGDFKFYRYSGNFFN HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEECCCCEE YLYTYKKDTLKDLISALRDSNIQTFDFLIDQMSHDTGLNTSFQAYLDYLVSNVDNLTDPS HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC TPAPDLANLSTNDPKVIRSFFRKTETGLKAKCTTAAFGLNSRFSCRGLIFGNATYSPDWN CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEHHEECCCCCCCEEEEEEECCCCCCCCC SAWSDFNSRINDLMSTLESSGVNNFQSMNCRIGEIRFDKHLNLFRPFTIYSCEGPLAYRS HHHHHHHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEECCCCCCCCCEEEEECCCCHHHHH RISYRHPQRGQTDFRNTRIGIHSTCFATPSNGSSTTCNTPIVTNAFSNTATYEEMYQKLN HCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHC GELNELKSEVYTMRPSFYKKLDCNFDSIDTIHLPDGRKYLAANSSCNF CHHHHHHHHHHHCCHHHHHHHCCCCCCCCEEECCCCCEEEECCCCCCC >Mature Secondary Structure MITNIKYKLAITLSVLVTFSLGCNSQNNGSKNDLSLFATMFAQATQQTTMRSTTVSVSSL CCCCEEEEHEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEHHHH NELIGFKPIQVENEQDFDRIADGKKRILVPSVMTFGPSNSYSNGTAQNITSNNCNGSYVA HHHHCCCCEEECCCCCHHHHHCCCCEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCEEE RLKPKEFVRFLETHDINCVDKFVWNYDQYSDYIYSQENMLEVVNRLNDLAPFYNGNNDLN EECHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHH FIQLFRMFWAGYYVKHSHPSLPFDTNQISQALVTPMQIFASSAHFLDGTNDAGKVLEFFF HHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH TVADSTKIGHTIYPRILSFLEATINDPQRLRNNLSQAIALNAVFRLFQRHIHSNSNEFLT HHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEH MIDYRLISKLRRLALDTSLNTDSQVWIINNAIFGLDRIYEYLPSFQPVIASVMTDVLETY HHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC PYISEPYLLGIKALTRHSDCANLRIGRICLSDIKETVKKAVLSNTYYFDDKTQIVHTALS CCCCCCHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHH IDEIQPLYHALKQVESQFFRLIGIHAPVSGDTTDSITMYVYKSRKDYETFHPFLFDLSTD HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEECCCCCHHHCCEEEEEECC NGGIYIERDKTLYTYQRTPAESIYTLEELLRHEYSHYLVGRFIIPGLWSQTSAHDNERLT CCCEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH WFEEGIAEFLTGSSSREIHPRKSLISEIKRDGSSRMDVSKILTARYGDFKFYRYSGNFFN HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEECCCCEE YLYTYKKDTLKDLISALRDSNIQTFDFLIDQMSHDTGLNTSFQAYLDYLVSNVDNLTDPS HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC TPAPDLANLSTNDPKVIRSFFRKTETGLKAKCTTAAFGLNSRFSCRGLIFGNATYSPDWN CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEHHEECCCCCCCEEEEEEECCCCCCCCC SAWSDFNSRINDLMSTLESSGVNNFQSMNCRIGEIRFDKHLNLFRPFTIYSCEGPLAYRS HHHHHHHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEECCCCCCCCCEEEEECCCCHHHHH RISYRHPQRGQTDFRNTRIGIHSTCFATPSNGSSTTCNTPIVTNAFSNTATYEEMYQKLN HCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHC GELNELKSEVYTMRPSFYKKLDCNFDSIDTIHLPDGRKYLAANSSCNF CHHHHHHHHHHHCCHHHHHHHCCCCCCCCEEECCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8282691; 11792842 [H]