| Definition | Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_005823 |
| Length | 4,277,185 |
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The map label for this gene is hsa
Identifier: 45658592
GI number: 45658592
Start: 3355124
End: 3356104
Strand: Direct
Name: hsa
Synonym: LIC12758
Alternate gene names: NA
Gene position: 3355124-3356104 (Clockwise)
Preceding gene: 45658589
Following gene: 45658594
Centisome position: 78.44
GC content: 33.13
Gene sequence:
>981_bases TTGACTTTCGGAATTTTGGCTCATCTAATATTCAATAACGAGCCGACTTTCCAAAAAGTGTCACTAAAAATCAAAAAAAT TCGAATGCTTGCGACGTTTCAAAAATTTTTCCAACTTAAATTCTCCAAGATCCAGAAATCTAAAATTGCAAAATCAGATA TTTTATTCCAAAACCAAAACAAATCACTTTTTATGAAAGGTGTATCATTTCTTTTCTTATGGATTTCTCTTTTTACAAAC TTAGATGCAAAGTCAATCCTACTCAAAAACGGTAGGACGATCAATAATGTGAGCGTTAAAACCGTTTCCAACGGTTTTGA AATTACTCATAAAAGTGGGAAAGTGGAAAAAATCCCTCTCACAGAAGTACAAAAAGTTTTTATTTCTGATCGAGCACCGA TTCCAGTCAAAAACCAAGAAACAGTAAAAAATCAAGAGACCACAAAAACGAACTCAGTCCCCAATTTAGAAACCGTAAAA GAAGAAAATATTCCGAAAAATCGAGAAAAAAAATCAGGGATTGGAGTTTTTGCCGAAGGATTAATACCAGGTTGGTCTAG ATTACTTAGAAATGATTCTTATTACGTAAAAGGATTAGGAGTCTTTTTCGTCTTTGTAGAACTATTCTTTGTCTATAAAA GTTATATATATTTAAGTCCTGTAAAACAAGCGATTGAAACAAACCAACCGGCTACTCCTTTGGATTTAATCGCTATTACA TCACAGGATCACAATCTAATGAATATAGCTGCTAGTTATAGCTTAGCTGAAAAATCTGGCCAAGTTGTACTTTCGGATGG TCAACTGTTAACTAAGGACCGTTATGCTTATGAAAAAGAAGGATTTACTCGTGGTCTTATTTTAATTTTAATTTTAGATG CGTTTCTAGGATATAAATTTGAAAACTGGGAAATTGTGCCTAACGTAAACGTTTCTTATCGAGATAAGGAAGTTTCAGGC GGTGTAACCATTCGGTTTTAA
Upstream 100 bases:
>100_bases GGCAAATTTCTTCTGCCTCTTCTTTGGAAGCCCCTTTACTAAGAAGAAACCGATAAATTTTCTCATAATTTCTAGAATAT AAACCGTCAAAATCAAAAAT
Downstream 100 bases:
>100_bases TTTTCCCTTTATAAAGATCCAAGATTAACAATTCTTAAATCAAATTTCTATATCCGATTGATATTTTAATCTACCTTCAT CAAATTTAGAACTTATTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MTFGILAHLIFNNEPTFQKVSLKIKKIRMLATFQKFFQLKFSKIQKSKIAKSDILFQNQNKSLFMKGVSFLFLWISLFTN LDAKSILLKNGRTINNVSVKTVSNGFEITHKSGKVEKIPLTEVQKVFISDRAPIPVKNQETVKNQETTKTNSVPNLETVK EENIPKNREKKSGIGVFAEGLIPGWSRLLRNDSYYVKGLGVFFVFVELFFVYKSYIYLSPVKQAIETNQPATPLDLIAIT SQDHNLMNIAASYSLAEKSGQVVLSDGQLLTKDRYAYEKEGFTRGLILILILDAFLGYKFENWEIVPNVNVSYRDKEVSG GVTIRF
Sequences:
>Translated_326_residues MTFGILAHLIFNNEPTFQKVSLKIKKIRMLATFQKFFQLKFSKIQKSKIAKSDILFQNQNKSLFMKGVSFLFLWISLFTN LDAKSILLKNGRTINNVSVKTVSNGFEITHKSGKVEKIPLTEVQKVFISDRAPIPVKNQETVKNQETTKTNSVPNLETVK EENIPKNREKKSGIGVFAEGLIPGWSRLLRNDSYYVKGLGVFFVFVELFFVYKSYIYLSPVKQAIETNQPATPLDLIAIT SQDHNLMNIAASYSLAEKSGQVVLSDGQLLTKDRYAYEKEGFTRGLILILILDAFLGYKFENWEIVPNVNVSYRDKEVSG GVTIRF >Mature_325_residues TFGILAHLIFNNEPTFQKVSLKIKKIRMLATFQKFFQLKFSKIQKSKIAKSDILFQNQNKSLFMKGVSFLFLWISLFTNL DAKSILLKNGRTINNVSVKTVSNGFEITHKSGKVEKIPLTEVQKVFISDRAPIPVKNQETVKNQETTKTNSVPNLETVKE ENIPKNREKKSGIGVFAEGLIPGWSRLLRNDSYYVKGLGVFFVFVELFFVYKSYIYLSPVKQAIETNQPATPLDLIAITS QDHNLMNIAASYSLAEKSGQVVLSDGQLLTKDRYAYEKEGFTRGLILILILDAFLGYKFENWEIVPNVNVSYRDKEVSGG VTIRF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37061; Mature: 36929
Theoretical pI: Translated: 10.28; Mature: 10.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFGILAHLIFNNEPTFQKVSLKIKKIRMLATFQKFFQLKFSKIQKSKIAKSDILFQNQN CCHHHEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCC KSLFMKGVSFLFLWISLFTNLDAKSILLKNGRTINNVSVKTVSNGFEITHKSGKVEKIPL CHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCEECCEEEEEECCCEEEEECCCCEEECCH TEVQKVFISDRAPIPVKNQETVKNQETTKTNSVPNLETVKEENIPKNREKKSGIGVFAEG HHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCHHCCCCEEEHH LIPGWSRLLRNDSYYVKGLGVFFVFVELFFVYKSYIYLSPVKQAIETNQPATPLDLIAIT CCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE SQDHNLMNIAASYSLAEKSGQVVLSDGQLLTKDRYAYEKEGFTRGLILILILDAFLGYKF CCCCCEEEHHHHHHHHHCCCCEEEECCCEEECCHHHHHHCCCCHHHHHHHHHHHHHCCEE ENWEIVPNVNVSYRDKEVSGGVTIRF CCEEEECCCCCEECCCCCCCCEEEEC >Mature Secondary Structure TFGILAHLIFNNEPTFQKVSLKIKKIRMLATFQKFFQLKFSKIQKSKIAKSDILFQNQN CHHHEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCC KSLFMKGVSFLFLWISLFTNLDAKSILLKNGRTINNVSVKTVSNGFEITHKSGKVEKIPL CHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCEECCEEEEEECCCEEEEECCCCEEECCH TEVQKVFISDRAPIPVKNQETVKNQETTKTNSVPNLETVKEENIPKNREKKSGIGVFAEG HHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCHHCCCCEEEHH LIPGWSRLLRNDSYYVKGLGVFFVFVELFFVYKSYIYLSPVKQAIETNQPATPLDLIAIT CCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE SQDHNLMNIAASYSLAEKSGQVVLSDGQLLTKDRYAYEKEGFTRGLILILILDAFLGYKF CCCCCEEEHHHHHHHHHCCCCEEEECCCEEECCHHHHHHCCCCHHHHHHHHHHHHHCCEE ENWEIVPNVNVSYRDKEVSGGVTIRF CCEEEECCCCCEECCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA