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The map label for this gene is secD

Identifier: 45658380

GI number: 45658380

Start: 3076709

End: 3078637

Strand: Reverse

Name: secD

Synonym: LIC12538

Alternate gene names: 45658380

Gene position: 3078637-3076709 (Counterclockwise)

Preceding gene: 45658381

Following gene: 45658379

Centisome position: 71.98

GC content: 39.35

Gene sequence:

>1929_bases
TTGAAATCTGCGACATGGATTTTTTTGCCGCTCTTGATTATTTTGGCGGCCACGGTGATACTTTATCCCAACTTCGCGAC
TAGAGAGTTGGAACTTGCGGTCAGAAAAGAATTTATTTCTATTTCTCCAGAACAAAAAAAGGCGATCCTTTCCCGTTTTG
AAGAACGTTGGAATCGAGAATATAAACAATCCGATTGGGTCATTTCTCCTTCTCCTTCCGAACTTAAGGATGAATCTTTC
TTGTTGGTAAAAGGAAGATTTATTACTTCGGCAAAGATCAATCAAATCTCTCAGGAAAATCCAGAACTGATCTTAGAAGC
CAAGAATAAACTTCGCCCTACTTTAGTGGAAGAGTGGATTACAAAGGGACGTCCTTTGACGATTAAACTCGGTTTGGATT
TGCAGGGTGGAATGAGAGTAGCGATGAAGGGAGATTTTGAAGACTACGCTTCTAAACTCCGAGAAAGTTATATTAAAGAA
ATTGAAAATTTAAACAAAACCGTGACGGATCCTTCTGCAGACGAAAAGGAAAAGAAAAAAGCCAAGGATCGTTTGAGTGA
AATTGAAAGTTACTTTGAACTTTCTCCGAGTCGAAAACTTTTAGAATTAGAAAAAGCAAAACTGATCATAGATAATCGTC
TAACGAGCCAAAATTTGACTGAACCTCAGGTACGGATTCAAAAGGATCAGGATTCCATAGAAGTTTCACTTCCAGGTGTA
ACCAATTCTTCCCAAATTTTGGAAATCATTCAAAATACCGAAACCGTGGAGTATCGTTTAGAAGAGCCGGAAAATTCTGC
AGGAAATGGTTTGACATACGCTTCTATCATTCAACAGGAAGAAAATAGGCTTCTCGAATTGAAAAGAAGGGAAGAAACGG
ATATAGTACAATATCAGAATATTATAAAACAGAAACTTGGAAAGGCAGAACAAGATAAGTTTCTACAAGGTTTAGAAGAA
AAGTATAAAATCCCTAGGGATAGATACAGGGTTTTTGCATATTGGGCCAGGGGAAATCATCAAAATTCTACCTTACTTCC
TAGAAAGTTTGTCGTTTTGGAAAAAGCGATCGCTTTGGATGGAAGGGATATGAGGGACGCAAGACCTTCCTTTGAAAATA
ATTCTTTTGGGTATATCGTTTCTTTTACTCTGACTAGCAGCGGGGCTGAAAAATTCTTTGAGATTACTTCCCAAAACAAA
GGTAGAAATTTAGCTATTGTTTGGGGGGATAAGGTTGTATCTGCCCCAACGATTCGAAGTGCTATCGCGGGTGGTGTGGC
TCAGATAGACGGTTCTTTTACAAAGGAAGAGGCGGTTGATCTTGCGAACGTGATCAGTGAAGGTGCGCTTCCGATTCCTT
TGAGAGTTTTGGAAATGAGATTTATCGGCCCTACTCTTGGAATTGAATCTATCGAAGTGGGTATGAAAGCGGTTTTGATC
GGATTTGTTTTAGTCATGTTCTATATGATTTTAATTTATCGTCTTTCGGGTCTGGTAGCGAACGCCGCACTTTTTGCGAA
TATAGTAATTTTAAGTGCCCTTCTTTCTTTGATGGGATTTACTTTGACTTTACCTGGTTTTGCCGGGATCATTTTGACGG
TAGGTATGGCGGTGGACGCTAACGTGATTATCTATGAAAGGATCAAGGAAGAATTGCGTGCGGGTAAGTCTGCAACTGTT
GCTGTGGCACAAGGATTTGACAACGCATTTTGGACGATTATAGATAGTAACGTAACTACTTTGATTTCTGGGATTTTGAT
GATTCGTCTTGGAAACGGTCCGATTAAAGGTTTTGCGATCACTCTGTGTTGGGGAATTATCACTTCTCTTTTTACATCCT
TGTTCTTAAGTCGTTTAGTGATGGATCTTTTGGTCAATCGTTTAGGGGTTCAGAAACTCCAGCTTGGCTTTAAAAAATTG
GAGTCCTAA

Upstream 100 bases:

>100_bases
TTTGCTTTATACCGATTGAAAGCGGGTAAATCACGCGGAAGTTCCAGCCGCAAATCCCCGGTTACGATCAATAAAATGAG
AAGAGATTAGGAGTTTTCTT

Downstream 100 bases:

>100_bases
AAGAATGTTTGATTTTATAAAATATAAATACGTTTCAATTTGTATTTCTCTGGCTCTAATCGTATTCGGTTTTAGTTATA
CGTATGCAGTTCACGGAGGT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 642; Mature: 642

Protein sequence:

>642_residues
MKSATWIFLPLLIILAATVILYPNFATRELELAVRKEFISISPEQKKAILSRFEERWNREYKQSDWVISPSPSELKDESF
LLVKGRFITSAKINQISQENPELILEAKNKLRPTLVEEWITKGRPLTIKLGLDLQGGMRVAMKGDFEDYASKLRESYIKE
IENLNKTVTDPSADEKEKKKAKDRLSEIESYFELSPSRKLLELEKAKLIIDNRLTSQNLTEPQVRIQKDQDSIEVSLPGV
TNSSQILEIIQNTETVEYRLEEPENSAGNGLTYASIIQQEENRLLELKRREETDIVQYQNIIKQKLGKAEQDKFLQGLEE
KYKIPRDRYRVFAYWARGNHQNSTLLPRKFVVLEKAIALDGRDMRDARPSFENNSFGYIVSFTLTSSGAEKFFEITSQNK
GRNLAIVWGDKVVSAPTIRSAIAGGVAQIDGSFTKEEAVDLANVISEGALPIPLRVLEMRFIGPTLGIESIEVGMKAVLI
GFVLVMFYMILIYRLSGLVANAALFANIVILSALLSLMGFTLTLPGFAGIILTVGMAVDANVIIYERIKEELRAGKSATV
AVAQGFDNAFWTIIDSNVTTLISGILMIRLGNGPIKGFAITLCWGIITSLFTSLFLSRLVMDLLVNRLGVQKLQLGFKKL
ES

Sequences:

>Translated_642_residues
MKSATWIFLPLLIILAATVILYPNFATRELELAVRKEFISISPEQKKAILSRFEERWNREYKQSDWVISPSPSELKDESF
LLVKGRFITSAKINQISQENPELILEAKNKLRPTLVEEWITKGRPLTIKLGLDLQGGMRVAMKGDFEDYASKLRESYIKE
IENLNKTVTDPSADEKEKKKAKDRLSEIESYFELSPSRKLLELEKAKLIIDNRLTSQNLTEPQVRIQKDQDSIEVSLPGV
TNSSQILEIIQNTETVEYRLEEPENSAGNGLTYASIIQQEENRLLELKRREETDIVQYQNIIKQKLGKAEQDKFLQGLEE
KYKIPRDRYRVFAYWARGNHQNSTLLPRKFVVLEKAIALDGRDMRDARPSFENNSFGYIVSFTLTSSGAEKFFEITSQNK
GRNLAIVWGDKVVSAPTIRSAIAGGVAQIDGSFTKEEAVDLANVISEGALPIPLRVLEMRFIGPTLGIESIEVGMKAVLI
GFVLVMFYMILIYRLSGLVANAALFANIVILSALLSLMGFTLTLPGFAGIILTVGMAVDANVIIYERIKEELRAGKSATV
AVAQGFDNAFWTIIDSNVTTLISGILMIRLGNGPIKGFAITLCWGIITSLFTSLFLSRLVMDLLVNRLGVQKLQLGFKKL
ES
>Mature_642_residues
MKSATWIFLPLLIILAATVILYPNFATRELELAVRKEFISISPEQKKAILSRFEERWNREYKQSDWVISPSPSELKDESF
LLVKGRFITSAKINQISQENPELILEAKNKLRPTLVEEWITKGRPLTIKLGLDLQGGMRVAMKGDFEDYASKLRESYIKE
IENLNKTVTDPSADEKEKKKAKDRLSEIESYFELSPSRKLLELEKAKLIIDNRLTSQNLTEPQVRIQKDQDSIEVSLPGV
TNSSQILEIIQNTETVEYRLEEPENSAGNGLTYASIIQQEENRLLELKRREETDIVQYQNIIKQKLGKAEQDKFLQGLEE
KYKIPRDRYRVFAYWARGNHQNSTLLPRKFVVLEKAIALDGRDMRDARPSFENNSFGYIVSFTLTSSGAEKFFEITSQNK
GRNLAIVWGDKVVSAPTIRSAIAGGVAQIDGSFTKEEAVDLANVISEGALPIPLRVLEMRFIGPTLGIESIEVGMKAVLI
GFVLVMFYMILIYRLSGLVANAALFANIVILSALLSLMGFTLTLPGFAGIILTVGMAVDANVIIYERIKEELRAGKSATV
AVAQGFDNAFWTIIDSNVTTLISGILMIRLGNGPIKGFAITLCWGIITSLFTSLFLSRLVMDLLVNRLGVQKLQLGFKKL
ES

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=305, Percent_Identity=37.0491803278689, Blast_Score=185, Evalue=6e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 72163; Mature: 72163

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSATWIFLPLLIILAATVILYPNFATRELELAVRKEFISISPEQKKAILSRFEERWNRE
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHH
YKQSDWVISPSPSELKDESFLLVKGRFITSAKINQISQENPELILEAKNKLRPTLVEEWI
HHCCCCEECCCCCCCCCCCEEEEECCEECHHHHHHHCCCCCCEEEECHHCCCHHHHHHHH
TKGRPLTIKLGLDLQGGMRVAMKGDFEDYASKLRESYIKEIENLNKTVTDPSADEKEKKK
HCCCCEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
AKDRLSEIESYFELSPSRKLLELEKAKLIIDNRLTSQNLTEPQVRIQKDQDSIEVSLPGV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHEEECCCCCEEEEECCC
TNSSQILEIIQNTETVEYRLEEPENSAGNGLTYASIIQQEENRLLELKRREETDIVQYQN
CCHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
IIKQKLGKAEQDKFLQGLEEKYKIPRDRYRVFAYWARGNHQNSTLLPRKFVVLEKAIALD
HHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCC
GRDMRDARPSFENNSFGYIVSFTLTSSGAEKFFEITSQNKGRNLAIVWGDKVVSAPTIRS
CCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHH
AIAGGVAQIDGSFTKEEAVDLANVISEGALPIPLRVLEMRFIGPTLGIESIEVGMKAVLI
HHHCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
GFVLVMFYMILIYRLSGLVANAALFANIVILSALLSLMGFTLTLPGFAGIILTVGMAVDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
NVIIYERIKEELRAGKSATVAVAQGFDNAFWTIIDSNVTTLISGILMIRLGNGPIKGFAI
CCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCHHHHHHHHHEEEECCCCCCHHHH
TLCWGIITSLFTSLFLSRLVMDLLVNRLGVQKLQLGFKKLES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC
>Mature Secondary Structure
MKSATWIFLPLLIILAATVILYPNFATRELELAVRKEFISISPEQKKAILSRFEERWNRE
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHH
YKQSDWVISPSPSELKDESFLLVKGRFITSAKINQISQENPELILEAKNKLRPTLVEEWI
HHCCCCEECCCCCCCCCCCEEEEECCEECHHHHHHHCCCCCCEEEECHHCCCHHHHHHHH
TKGRPLTIKLGLDLQGGMRVAMKGDFEDYASKLRESYIKEIENLNKTVTDPSADEKEKKK
HCCCCEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
AKDRLSEIESYFELSPSRKLLELEKAKLIIDNRLTSQNLTEPQVRIQKDQDSIEVSLPGV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHEEECCCCCEEEEECCC
TNSSQILEIIQNTETVEYRLEEPENSAGNGLTYASIIQQEENRLLELKRREETDIVQYQN
CCHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
IIKQKLGKAEQDKFLQGLEEKYKIPRDRYRVFAYWARGNHQNSTLLPRKFVVLEKAIALD
HHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCC
GRDMRDARPSFENNSFGYIVSFTLTSSGAEKFFEITSQNKGRNLAIVWGDKVVSAPTIRS
CCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHH
AIAGGVAQIDGSFTKEEAVDLANVISEGALPIPLRVLEMRFIGPTLGIESIEVGMKAVLI
HHHCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
GFVLVMFYMILIYRLSGLVANAALFANIVILSALLSLMGFTLTLPGFAGIILTVGMAVDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
NVIIYERIKEELRAGKSATVAVAQGFDNAFWTIIDSNVTTLISGILMIRLGNGPIKGFAI
CCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCHHHHHHHHHEEEECCCCCCHHHH
TLCWGIITSLFTSLFLSRLVMDLLVNRLGVQKLQLGFKKLES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA