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The map label for this gene is secF

Identifier: 45658379

GI number: 45658379

Start: 3075766

End: 3076734

Strand: Reverse

Name: secF

Synonym: LIC12537

Alternate gene names: 45658379

Gene position: 3076734-3075766 (Counterclockwise)

Preceding gene: 45658380

Following gene: 45658378

Centisome position: 71.93

GC content: 35.91

Gene sequence:

>969_bases
TTGGCTTTAAAAAATTGGAGTCCTAAAAGAATGTTTGATTTTATAAAATATAAATACGTTTCAATTTGTATTTCTCTGGC
TCTAATCGTATTCGGTTTTAGTTATACGTATGCAGTTCACGGAGGTTTTGCCAACTCTTTGGATTTTAACGGTGGTCTTA
GAACTGTAGTCGAGTTCGATCAAAATATGGATCGTAAAAAGTTGGAAAATTACTTTGCGGAAAATAAGATCGAAGCAGTG
CTTTTGCTTTTAGATAAAGAAAAACATCACTATCAAATCGATATAGGTCTAGGCTCAGTAGATTCAATTTTACTAAAATA
CAGAGAGAAAAACGGATTAAAACCTACGGATAAGGTAGAACTTTCTGGAATCGATGCTTTGATTTCGATTTTAATCGCGG
ATTTTAGAATTGATAAAAGTAATATACTCAGCGCTAATCAAGTAGGTGCGATTGTAGGAGGAGAGCTTTCTTCTACTGGA
ACTACTTTGCTTGGACTTACGATGGCGATTATACTCGCATATATTAGTTTTCGATTTCAATTTAAGTTTGCTTTGGGAGC
CATTTTGGCTTTGACGCACGACCTCATTTTGACGGTTGCGTTTATAGGATTTTTTCAAATTAAACCAAGTGTTCCTATTA
TTGCCGCCTTATTGACATTACTTGGGTATTCGATCAATGATACGATCGTAGTATTTGATAGAATCCGAGAAAATTCCGCA
GGAAATTTGAATCAAACTTTCGGACAGACGATCAATTCTGCGATTAATCAGACTTTGGGAAGAACGTTTAACACTTCTTT
TGCGACTTTGATTTCTATCGTAGCAATTATCATCGGTGGAGCAACCGAACTATTCGATTTTGCTTACGTTCTTACGTTTG
GAATTGTGATTGGAACGTATTCTTCGATTTTTATTGCAGCCCCTCTTGTAGATATTTACGACCAAGTTATACGAAAGGCT
CGCGACTGA

Upstream 100 bases:

>100_bases
CTGTGTTGGGGAATTATCACTTCTCTTTTTACATCCTTGTTCTTAAGTCGTTTAGTGATGGATCTTTTGGTCAATCGTTT
AGGGGTTCAGAAACTCCAGC

Downstream 100 bases:

>100_bases
TGACTTCCCTCCCGGAAAAATTTCGGGAGGAATTGCGCAAACTTTCCTTTTTATCCATGGGGGAAAGTTCGCCGAACCCC
CCTGTTTCTTGTCTCATTAC

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MALKNWSPKRMFDFIKYKYVSICISLALIVFGFSYTYAVHGGFANSLDFNGGLRTVVEFDQNMDRKKLENYFAENKIEAV
LLLLDKEKHHYQIDIGLGSVDSILLKYREKNGLKPTDKVELSGIDALISILIADFRIDKSNILSANQVGAIVGGELSSTG
TTLLGLTMAIILAYISFRFQFKFALGAILALTHDLILTVAFIGFFQIKPSVPIIAALLTLLGYSINDTIVVFDRIRENSA
GNLNQTFGQTINSAINQTLGRTFNTSFATLISIVAIIIGGATELFDFAYVLTFGIVIGTYSSIFIAAPLVDIYDQVIRKA
RD

Sequences:

>Translated_322_residues
MALKNWSPKRMFDFIKYKYVSICISLALIVFGFSYTYAVHGGFANSLDFNGGLRTVVEFDQNMDRKKLENYFAENKIEAV
LLLLDKEKHHYQIDIGLGSVDSILLKYREKNGLKPTDKVELSGIDALISILIADFRIDKSNILSANQVGAIVGGELSSTG
TTLLGLTMAIILAYISFRFQFKFALGAILALTHDLILTVAFIGFFQIKPSVPIIAALLTLLGYSINDTIVVFDRIRENSA
GNLNQTFGQTINSAINQTLGRTFNTSFATLISIVAIIIGGATELFDFAYVLTFGIVIGTYSSIFIAAPLVDIYDQVIRKA
RD
>Mature_321_residues
ALKNWSPKRMFDFIKYKYVSICISLALIVFGFSYTYAVHGGFANSLDFNGGLRTVVEFDQNMDRKKLENYFAENKIEAVL
LLLDKEKHHYQIDIGLGSVDSILLKYREKNGLKPTDKVELSGIDALISILIADFRIDKSNILSANQVGAIVGGELSSTGT
TLLGLTMAIILAYISFRFQFKFALGAILALTHDLILTVAFIGFFQIKPSVPIIAALLTLLGYSINDTIVVFDRIRENSAG
NLNQTFGQTINSAINQTLGRTFNTSFATLISIVAIIIGGATELFDFAYVLTFGIVIGTYSSIFIAAPLVDIYDQVIRKAR
D

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=308, Percent_Identity=30.5194805194805, Blast_Score=125, Evalue=5e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 35532; Mature: 35401

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALKNWSPKRMFDFIKYKYVSICISLALIVFGFSYTYAVHGGFANSLDFNGGLRTVVEFD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHH
QNMDRKKLENYFAENKIEAVLLLLDKEKHHYQIDIGLGSVDSILLKYREKNGLKPTDKVE
CCCCHHHHHHHHHHCHHHEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCEE
LSGIDALISILIADFRIDKSNILSANQVGAIVGGELSSTGTTLLGLTMAIILAYISFRFQ
HHHHHHHHHHHHHHHEECHHHCCCHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
FKFALGAILALTHDLILTVAFIGFFQIKPSVPIIAALLTLLGYSINDTIVVFDRIRENSA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEEHHCCCCC
GNLNQTFGQTINSAINQTLGRTFNTSFATLISIVAIIIGGATELFDFAYVLTFGIVIGTY
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
SSIFIAAPLVDIYDQVIRKARD
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ALKNWSPKRMFDFIKYKYVSICISLALIVFGFSYTYAVHGGFANSLDFNGGLRTVVEFD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHH
QNMDRKKLENYFAENKIEAVLLLLDKEKHHYQIDIGLGSVDSILLKYREKNGLKPTDKVE
CCCCHHHHHHHHHHCHHHEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCEE
LSGIDALISILIADFRIDKSNILSANQVGAIVGGELSSTGTTLLGLTMAIILAYISFRFQ
HHHHHHHHHHHHHHHEECHHHCCCHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
FKFALGAILALTHDLILTVAFIGFFQIKPSVPIIAALLTLLGYSINDTIVVFDRIRENSA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEEHHCCCCC
GNLNQTFGQTINSAINQTLGRTFNTSFATLISIVAIIIGGATELFDFAYVLTFGIVIGTY
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
SSIFIAAPLVDIYDQVIRKARD
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]