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The map label for this gene is 45658355

Identifier: 45658355

GI number: 45658355

Start: 3041218

End: 3041838

Strand: Reverse

Name: 45658355

Synonym: LIC12513

Alternate gene names: NA

Gene position: 3041838-3041218 (Counterclockwise)

Preceding gene: 45658356

Following gene: 45658353

Centisome position: 71.12

GC content: 39.29

Gene sequence:

>621_bases
ATGACCTCGAAAGAATGTTCCACAGAAAATGAAGAAGTTACCGGAAAAGAACCGGATAGAGTTGTAAGAAAATTATTTCG
ACAAACGTTAGTCGGAATTGTGATTCTCGTATTAGGAGTAGTTTTTCTTGCAAGAGTATTTCCGGAACCTGTGCTTGTTG
TATCCCAGAAGTTTATAGAAATTACGGGAGTGTTTGGGGTAGGAGTGGGAATTATGCTTGCAGATTCTCTGCACGTATTT
ATACCACCAGACGTATTTTTAATGTTTGCAGTGGCCGGAAAACTCAATTCAGTACTTGTAATCGTATCGGCTTCGATTGG
AAGTTTAATCGGAGGGAGTGTTTCTTATTTAACGGGAAGGATTCTTTTGCCGAAGATGGAAAGAATTTCTACCTTTGTAA
AAAGACATGAGCAGAAGTTGGAACACTATCTGCATCGATACGGATTTTGGGCGGTTGTTTTGGCTGCTTTGACCCCGCTT
CCATATTCTTGGGTATCACTTGCGGCTGGGGCGATGAAAATGAAATATTCTTTGTTTTTTAAAGGGTGTCTATTTAGAAT
TCCGCGTTTTATCGTATTTTATTATCTAATTCAATTTGGATGGGTAAGCGGAGGAATGTAA

Upstream 100 bases:

>100_bases
TCCGATCCTATCTTGGCGGAAATTTTAAATAGACTGAGTTATTGCGAAAATCCATCCCGTTGTCCACACGGAAGGCCTAC
CCTAGTAAAGTTGAGCAGAG

Downstream 100 bases:

>100_bases
AATATTTTCATAACATAATATTCTAAATTTAAAAAAACACGCAGAGTTTGTCCAAAACTTCACGATCAGGTCTTTAATAA
TAAAACACATTCATAAAATA

Product: cytoplasmic membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MTSKECSTENEEVTGKEPDRVVRKLFRQTLVGIVILVLGVVFLARVFPEPVLVVSQKFIEITGVFGVGVGIMLADSLHVF
IPPDVFLMFAVAGKLNSVLVIVSASIGSLIGGSVSYLTGRILLPKMERISTFVKRHEQKLEHYLHRYGFWAVVLAALTPL
PYSWVSLAAGAMKMKYSLFFKGCLFRIPRFIVFYYLIQFGWVSGGM

Sequences:

>Translated_206_residues
MTSKECSTENEEVTGKEPDRVVRKLFRQTLVGIVILVLGVVFLARVFPEPVLVVSQKFIEITGVFGVGVGIMLADSLHVF
IPPDVFLMFAVAGKLNSVLVIVSASIGSLIGGSVSYLTGRILLPKMERISTFVKRHEQKLEHYLHRYGFWAVVLAALTPL
PYSWVSLAAGAMKMKYSLFFKGCLFRIPRFIVFYYLIQFGWVSGGM
>Mature_205_residues
TSKECSTENEEVTGKEPDRVVRKLFRQTLVGIVILVLGVVFLARVFPEPVLVVSQKFIEITGVFGVGVGIMLADSLHVFI
PPDVFLMFAVAGKLNSVLVIVSASIGSLIGGSVSYLTGRILLPKMERISTFVKRHEQKLEHYLHRYGFWAVVLAALTPLP
YSWVSLAAGAMKMKYSLFFKGCLFRIPRFIVFYYLIQFGWVSGGM

Specific function: Unknown

COG id: COG1238

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016118
- InterPro:   IPR000326
- InterPro:   IPR015414 [H]

Pfam domain/function: PF01569 PAP2; PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 22970; Mature: 22839

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSKECSTENEEVTGKEPDRVVRKLFRQTLVGIVILVLGVVFLARVFPEPVLVVSQKFIE
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ITGVFGVGVGIMLADSLHVFIPPDVFLMFAVAGKLNSVLVIVSASIGSLIGGSVSYLTGR
HHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCHHHHHHHH
ILLPKMERISTFVKRHEQKLEHYLHRYGFWAVVLAALTPLPYSWVSLAAGAMKMKYSLFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
KGCLFRIPRFIVFYYLIQFGWVSGGM
HHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TSKECSTENEEVTGKEPDRVVRKLFRQTLVGIVILVLGVVFLARVFPEPVLVVSQKFIE
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ITGVFGVGVGIMLADSLHVFIPPDVFLMFAVAGKLNSVLVIVSASIGSLIGGSVSYLTGR
HHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCHHHHHHHH
ILLPKMERISTFVKRHEQKLEHYLHRYGFWAVVLAALTPLPYSWVSLAAGAMKMKYSLFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
KGCLFRIPRFIVFYYLIQFGWVSGGM
HHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]