| Definition | Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_005823 |
| Length | 4,277,185 |
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The map label for this gene is rsbP [H]
Identifier: 45658338
GI number: 45658338
Start: 3021994
End: 3023376
Strand: Reverse
Name: rsbP [H]
Synonym: LIC12496
Alternate gene names: 45658338
Gene position: 3023376-3021994 (Counterclockwise)
Preceding gene: 45658339
Following gene: 45658337
Centisome position: 70.69
GC content: 35.79
Gene sequence:
>1383_bases ATGACTTGGATAAAACGATTCAGTAGATTCAAATCCGATTTTTTAAACCCTTTCACTTTCTTTGAAAGGGAATTTAATTA TAGCGAGGCTCAGTCTTGGAAAGATCAGACTAGAATCGATCAGTCTTTTATACGGCTTGCGTTTCTTCTTCATTTTATGA TGTATTCTACGCTTGCGATTCCAGAAGTCAGAAGTTCACAAAGGGGTGGTGTTTATTTAGGTATTATCTTTCTGGTCAAC GTAATGGGGTTGGTTCTTTCTTTTCAGGAAAGGTTTCTTTCTTGGGTAATTCACATTTCGAACGTGATCATCATTTTTTT ATTGATGAATTTATTTCACGAATCTTTCTATCACTTTCGAGATTTAGAAAGCCTTCAGATTTATAATAATTATTTTTTAC TAATATCGTTTATTGTAATATTCCAAATGTTTCGTTTGAAAAAGGGCTCTTGTTTTTTAACCGGAACGGTTTCAATTTGT CTACATATCTTTTTCGTTTCCATTAAAAGAATGGAATTAGGGTTAGATGATTTTCCTAGAATCCTTTTTGTGCCAGACGT GGTCTATGTTCTTTGTATCGTTATCGGTACTTCTTCCGTGATTATCGTAAAAAGGCTGATTTCTATTTCGTCTGAGTTGG ATCTAGAATATAAATTTATTCAACAGGATCTTATCGTGGCAAAACAGGTTCAGGAAAATTTATTTCCTGGAAAACTGAGT ATCAAAGGGATTCGTTATGAAGTGATGAGAATTGCGCCCAATCATATAGGCGGAGACTTTTTTGATTTTGTACAACTCCG GGAAGGAAACACTGGAATTTTTCTTACAGACGTAGCGGGGCACGGGATCGCTTCCGCTCTTGTTGCTTCGATGGTTAAGA TTATGGTTTCTACGATGCCTTATATTTTGAAAGTACATCCTTCTCGTTTGATGGATTATATAGACGATTCTCTCCATAAA CAATTTCAGTCTTATCACGCGTCTGCGATTTATATGTTTTTGGATTTTATTTCTAGGGAAGTTACCTTTTCGAATGCGGG ACATCCGTATTTGATCCACGGTTCTTTTTCAAAAGAATTTCACGAAGTAGAAACGGAAGGCGCCATTTTAGGTTTTGGAA TTAAAAAGCCAATTGCAGAACAAGTCAAATTTCCTCTCGTTGAGAAGGATCGGTTTTTTTTATATACGGATGGTTTGATA GAAAACAAGAATCGAGAAGGAAAACTTCTTGGAACGGAAGGGCTGCTTGAAATATTGAATGCGAACCGATTTGAAAAAGA TTTGAGCACCTTTAAAGCAAACGTACAAAAAACGGTCGAAGATTTTTTTGGAAACGTAGCTTTAGAAGACGATACACTTT TTTTGATCGTGGAAGTGGAGTAA
Upstream 100 bases:
>100_bases GATGAAAAAGAGGCGCTTAAAATTTCGGAAAAGCTGGATCAATATCTAGAGTCCGGATGGAATTTGAAAATTTATCTTTC CGGATCGGAAATTGTTCGTT
Downstream 100 bases:
>100_bases AATAGAAATGAGTGAAAAATTAATCAATATAACTAAAGAAGGACAAATTGCAATTCTTACGATCCAAAGACCTTCCGCTT TGAATGCCCTCAATCGGGAA
Product: sigma factor regulatory protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 460; Mature: 459
Protein sequence:
>460_residues MTWIKRFSRFKSDFLNPFTFFEREFNYSEAQSWKDQTRIDQSFIRLAFLLHFMMYSTLAIPEVRSSQRGGVYLGIIFLVN VMGLVLSFQERFLSWVIHISNVIIIFLLMNLFHESFYHFRDLESLQIYNNYFLLISFIVIFQMFRLKKGSCFLTGTVSIC LHIFFVSIKRMELGLDDFPRILFVPDVVYVLCIVIGTSSVIIVKRLISISSELDLEYKFIQQDLIVAKQVQENLFPGKLS IKGIRYEVMRIAPNHIGGDFFDFVQLREGNTGIFLTDVAGHGIASALVASMVKIMVSTMPYILKVHPSRLMDYIDDSLHK QFQSYHASAIYMFLDFISREVTFSNAGHPYLIHGSFSKEFHEVETEGAILGFGIKKPIAEQVKFPLVEKDRFFLYTDGLI ENKNREGKLLGTEGLLEILNANRFEKDLSTFKANVQKTVEDFFGNVALEDDTLFLIVEVE
Sequences:
>Translated_460_residues MTWIKRFSRFKSDFLNPFTFFEREFNYSEAQSWKDQTRIDQSFIRLAFLLHFMMYSTLAIPEVRSSQRGGVYLGIIFLVN VMGLVLSFQERFLSWVIHISNVIIIFLLMNLFHESFYHFRDLESLQIYNNYFLLISFIVIFQMFRLKKGSCFLTGTVSIC LHIFFVSIKRMELGLDDFPRILFVPDVVYVLCIVIGTSSVIIVKRLISISSELDLEYKFIQQDLIVAKQVQENLFPGKLS IKGIRYEVMRIAPNHIGGDFFDFVQLREGNTGIFLTDVAGHGIASALVASMVKIMVSTMPYILKVHPSRLMDYIDDSLHK QFQSYHASAIYMFLDFISREVTFSNAGHPYLIHGSFSKEFHEVETEGAILGFGIKKPIAEQVKFPLVEKDRFFLYTDGLI ENKNREGKLLGTEGLLEILNANRFEKDLSTFKANVQKTVEDFFGNVALEDDTLFLIVEVE >Mature_459_residues TWIKRFSRFKSDFLNPFTFFEREFNYSEAQSWKDQTRIDQSFIRLAFLLHFMMYSTLAIPEVRSSQRGGVYLGIIFLVNV MGLVLSFQERFLSWVIHISNVIIIFLLMNLFHESFYHFRDLESLQIYNNYFLLISFIVIFQMFRLKKGSCFLTGTVSICL HIFFVSIKRMELGLDDFPRILFVPDVVYVLCIVIGTSSVIIVKRLISISSELDLEYKFIQQDLIVAKQVQENLFPGKLSI KGIRYEVMRIAPNHIGGDFFDFVQLREGNTGIFLTDVAGHGIASALVASMVKIMVSTMPYILKVHPSRLMDYIDDSLHKQ FQSYHASAIYMFLDFISREVTFSNAGHPYLIHGSFSKEFHEVETEGAILGFGIKKPIAEQVKFPLVEKDRFFLYTDGLIE NKNREGKLLGTEGLLEILNANRFEKDLSTFKANVQKTVEDFFGNVALEDDTLFLIVEVE
Specific function: Positive regulator of sigma-B activity. Dephosphorylates rsbV in response to energy stress [H]
COG id: COG2208
COG function: function code TK; Serine phosphatase RsbU, regulator of sigma subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PP2C-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR001932 - InterPro: IPR010822 [H]
Pfam domain/function: PF00989 PAS; PF07228 SpoIIE [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 53222; Mature: 53091
Theoretical pI: Translated: 6.58; Mature: 6.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTWIKRFSRFKSDFLNPFTFFEREFNYSEAQSWKDQTRIDQSFIRLAFLLHFMMYSTLAI CCHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PEVRSSQRGGVYLGIIFLVNVMGLVLSFQERFLSWVIHISNVIIIFLLMNLFHESFYHFR CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLESLQIYNNYFLLISFIVIFQMFRLKKGSCFLTGTVSICLHIFFVSIKRMELGLDDFPR CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCC ILFVPDVVYVLCIVIGTSSVIIVKRLISISSELDLEYKFIQQDLIVAKQVQENLFPGKLS CEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEE IKGIRYEVMRIAPNHIGGDFFDFVQLREGNTGIFLTDVAGHGIASALVASMVKIMVSTMP ECHHEEEEEEECCCCCCCHHHHHHHEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCC YILKVHPSRLMDYIDDSLHKQFQSYHASAIYMFLDFISREVTFSNAGHPYLIHGSFSKEF HHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCCEEEECCHHHHH HEVETEGAILGFGIKKPIAEQVKFPLVEKDRFFLYTDGLIENKNREGKLLGTEGLLEILN HHHHCCCCEEECCCCCCHHHHHCCCCCCCCCEEEEECCEEECCCCCCCEECHHHHHHHHH ANRFEKDLSTFKANVQKTVEDFFGNVALEDDTLFLIVEVE CCHHHHHHHHHHHHHHHHHHHHHCCEEEECCEEEEEEEEC >Mature Secondary Structure TWIKRFSRFKSDFLNPFTFFEREFNYSEAQSWKDQTRIDQSFIRLAFLLHFMMYSTLAI CHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PEVRSSQRGGVYLGIIFLVNVMGLVLSFQERFLSWVIHISNVIIIFLLMNLFHESFYHFR CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLESLQIYNNYFLLISFIVIFQMFRLKKGSCFLTGTVSICLHIFFVSIKRMELGLDDFPR CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCC ILFVPDVVYVLCIVIGTSSVIIVKRLISISSELDLEYKFIQQDLIVAKQVQENLFPGKLS CEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEE IKGIRYEVMRIAPNHIGGDFFDFVQLREGNTGIFLTDVAGHGIASALVASMVKIMVSTMP ECHHEEEEEEECCCCCCCHHHHHHHEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCC YILKVHPSRLMDYIDDSLHKQFQSYHASAIYMFLDFISREVTFSNAGHPYLIHGSFSKEF HHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCCEEEECCHHHHH HEVETEGAILGFGIKKPIAEQVKFPLVEKDRFFLYTDGLIENKNREGKLLGTEGLLEILN HHHHCCCCEEECCCCCCHHHHHCCCCCCCCCEEEEECCEEECCCCCCCEECHHHHHHHHH ANRFEKDLSTFKANVQKTVEDFFGNVALEDDTLFLIVEVE CCHHHHHHHHHHHHHHHHHHHHHCCEEEECCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 10632888 [H]