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The map label for this gene is 45658228

Identifier: 45658228

GI number: 45658228

Start: 2888165

End: 2888881

Strand: Reverse

Name: 45658228

Synonym: LIC12382

Alternate gene names: NA

Gene position: 2888881-2888165 (Counterclockwise)

Preceding gene: 45658229

Following gene: 45658223

Centisome position: 67.54

GC content: 37.52

Gene sequence:

>717_bases
GTGCTTAATATGGAAGAAAATTCTGAATCTCATAAAGGTAAAAAACGATCTTTTAAAAGAAAATTTTTAATTTGGCTGAT
TCCGTTTTTTGTGGTCAACTTACAAAGATTGATTGGGTTGACTTCTCGTAGAATCAATATTGGAGACGAAAGCATTCGTA
AAATCCGCAAAGAAAAAAAGCCTTACATACTTTCTGGTTGGCATACAAATGTTTTATATTCTCCTTATCTCAATCGAAAT
GAGAGGATGGCAGTTCTCATTTCGGAATCTAAAGATGGAGATTTTATCAATCAAGTCGTTCATAGATTTGGTAATTATAG
TATCCGAGGAAGTTCTTCCAAAGGCGGTTCTAAGGCTTTAAAGGCACTGATCGTTCATCTTAAAAAAAATTTTCCTGCGG
CGATTACTCCCGATGGCCCTAGAGGTCCTGCGCTTGTGGTGCAGCCTGGTTTGATTGCTGCGGCTCAGGTTTCCCAGGTC
CCTATCGTTTCATTTCATTACGAATGTACTCGTCAATGGATCGCCGAAAAAACCTGGGATAAACATAGAATTCCAAAACC
GTTTACCACCTTTGTAGTGTCCTACGGAGAACCGATCTATATTCCTAGAAATTTAGACGAAAAAGGTTTTGAAGAAGCCA
GATTGATGGTAGAAAAAGCCATGTTGGAAAATCGTCAGAAAAGTATTGATAAAGCAGAAGAGTTAAGAAAAAAATAA

Upstream 100 bases:

>100_bases
TTTTTTCTGTGATTTTTTAAATACGAAGTATATTTTCGCAATTCTACCTTGAATTCAGTTTAGAAAAAGAGGTGATGAAT
TTTGGAAGTTAAAAACCCTC

Downstream 100 bases:

>100_bases
TATTCTAAAAAATAAATATTTAATTTTTTGTTCTATCTGAGTTTTTTGTGGATTTATATTTTAATATATTTTGGAATCCA
TTACAAATAATTGCAAAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MLNMEENSESHKGKKRSFKRKFLIWLIPFFVVNLQRLIGLTSRRINIGDESIRKIRKEKKPYILSGWHTNVLYSPYLNRN
ERMAVLISESKDGDFINQVVHRFGNYSIRGSSSKGGSKALKALIVHLKKNFPAAITPDGPRGPALVVQPGLIAAAQVSQV
PIVSFHYECTRQWIAEKTWDKHRIPKPFTTFVVSYGEPIYIPRNLDEKGFEEARLMVEKAMLENRQKSIDKAEELRKK

Sequences:

>Translated_238_residues
MLNMEENSESHKGKKRSFKRKFLIWLIPFFVVNLQRLIGLTSRRINIGDESIRKIRKEKKPYILSGWHTNVLYSPYLNRN
ERMAVLISESKDGDFINQVVHRFGNYSIRGSSSKGGSKALKALIVHLKKNFPAAITPDGPRGPALVVQPGLIAAAQVSQV
PIVSFHYECTRQWIAEKTWDKHRIPKPFTTFVVSYGEPIYIPRNLDEKGFEEARLMVEKAMLENRQKSIDKAEELRKK
>Mature_238_residues
MLNMEENSESHKGKKRSFKRKFLIWLIPFFVVNLQRLIGLTSRRINIGDESIRKIRKEKKPYILSGWHTNVLYSPYLNRN
ERMAVLISESKDGDFINQVVHRFGNYSIRGSSSKGGSKALKALIVHLKKNFPAAITPDGPRGPALVVQPGLIAAAQVSQV
PIVSFHYECTRQWIAEKTWDKHRIPKPFTTFVVSYGEPIYIPRNLDEKGFEEARLMVEKAMLENRQKSIDKAEELRKK

Specific function: Unknown

COG id: COG2121

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To H.pylori HP0270 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007172
- ProDom:   PD032436 [H]

Pfam domain/function: PF04028 DUF374 [H]

EC number: NA

Molecular weight: Translated: 27421; Mature: 27421

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: PS00392 DDC_GAD_HDC_YDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNMEENSESHKGKKRSFKRKFLIWLIPFFVVNLQRLIGLTSRRINIGDESIRKIRKEKK
CCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCHHHHHHHHHHCC
PYILSGWHTNVLYSPYLNRNERMAVLISESKDGDFINQVVHRFGNYSIRGSSSKGGSKAL
CEEEECCCCCEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCHHHHH
KALIVHLKKNFPAAITPDGPRGPALVVQPGLIAAAQVSQVPIVSFHYECTRQWIAEKTWD
HHHHHHHHHCCCCEECCCCCCCCEEEECCCCHHHHHHCCCCEEEEHHHHHHHHHHHHCHH
KHRIPKPFTTFVVSYGEPIYIPRNLDEKGFEEARLMVEKAMLENRQKSIDKAEELRKK
HCCCCCHHHHHEEECCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLNMEENSESHKGKKRSFKRKFLIWLIPFFVVNLQRLIGLTSRRINIGDESIRKIRKEKK
CCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCHHHHHHHHHHCC
PYILSGWHTNVLYSPYLNRNERMAVLISESKDGDFINQVVHRFGNYSIRGSSSKGGSKAL
CEEEECCCCCEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCHHHHH
KALIVHLKKNFPAAITPDGPRGPALVVQPGLIAAAQVSQVPIVSFHYECTRQWIAEKTWD
HHHHHHHHHCCCCEECCCCCCCCEEEECCCCHHHHHHCCCCEEEEHHHHHHHHHHHHCHH
KHRIPKPFTTFVVSYGEPIYIPRNLDEKGFEEARLMVEKAMLENRQKSIDKAEELRKK
HCCCCCHHHHHEEECCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]