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The map label for this gene is cagA

Identifier: 45658210

GI number: 45658210

Start: 2864056

End: 2866047

Strand: Direct

Name: cagA

Synonym: LIC12364

Alternate gene names: NA

Gene position: 2864056-2866047 (Clockwise)

Preceding gene: 45658208

Following gene: 45658216

Centisome position: 66.96

GC content: 33.18

Gene sequence:

>1992_bases
ATGCGTTTCAGTTACCTTTTGTTTTTTCTTTTTTTACTCTGGTTCCCTACCAAAGTTTTTGCACAAAACAAACATTCTAA
AATTTATATCCATAAACTGACAACAGAAAGTAATCTAAATTCCGGTTTGGAAAATAGATTTCGAAATGGAATTATCAATT
CTATTCTTAGAAACTTTGAAGGTAAATATACAATTGTAGATGACGATTCACTATCGATTCTTTTGAAACAAGTAGAAACT
CTTCAAAAGATGGATTGTTCAGATGAAATTTGTATGAAACAGATAGCAGATGCAATTGACGCCAACGAAGTAATTTCAGG
CACAATCTCTTCTCAAAACGGCATTATCTATGTGTCTTTACGAAATCAAATCAGAGATTCAAAAAATTTAAACTACTCTA
TCAAGTCCACGTTTCAGATGGAATTTCCAGAATTTCTTTTAGACTACTACGCTGGAGAATCCGGTAAAAAACTTTTAGAC
CTCCAATATAATCTTGATCCTCATAAAGTTCCTGCTTCTACAAACGGAAATCTAAGCGTAACATTTTTAAAAATTAAACC
GGTTCCCGGAACCAACCTAAATTCTATGGAATTTAAAACCTCTGACAAAATTTTAGTTGGAGTTTTAGAAGAAATTAAAG
AAGAACTAGATAAGGCAATCCAATACAGTCGTTCCAAAGAATATACAGAATCTATCGAAATCTACAATCGGATCTTAAAC
GCGTTTAACGAACGTCTTTCGTCCGAGTCTCTAAAAAGATTAGAACCGTTTGTTCGAGAAATTCAAACGAGTATTACAAA
TAATTATAATTTAGAATATAAGGAAAAAATAAATAATCTGGATCGTAATCTTTTTGATTCGAGCCCGGAAGATTTAGAAA
AACGTCTTTCCGATTATCATTCTCTTTTAAAGGAATATTCCTCCCAGGTTCCTGAAAAATACAGACAACTCCAAATTCTA
CAAAGTATCCAGGAAAGAAAAGAGAAAGTAGAACTTGCCCTATTTTCCTTAAAGGAAAAAGAAGCGGATCAGGCTTATTC
TAAATTTGACTTTTCTCTTTCTTCTAAACTATATTCAAATATTCTTAAAGAGCTTCCGGAAAAAATGGACGGGTCTTATA
AATCGTTTAGAGAAACGATCGAAAAAAAAGCAGAAACCTCTGAAAAAACGGGGCGTTCTCATTTATCCAATCGTTTGGAA
ACGATTTATCTTCTCATCGAAAGAGAATTTACTGTGGAAGCTTTGGCAGATGCGGAAGAAGAAAAAGAATCTCATCAAAA
TAAAATTCATGAAGCGTTTCGAGAAGGGATCATAACTCTTGCAAAATCTGAATTTACCAATCTGACTCAAATCGATAGAA
TCAAAAAAGAAGCCAAACGAGTGAACCAAAAACTGAAAGTTCCCATTTCTTTTCAAGTCCAATTGAATTCACTTCTACAC
GAAGGTTTAGAAACTAAAAATCCTACTCAGATCGTAAATAGTCATCTGCTCGGAGCGGACTGGGAAAGTAAGACAGGTTT
TTTTTGGGGTTCTGCTAAATCTAAACTCAAAGAAATTTTAGAAGGTACGGTTCAAACTGGAAATCCAAATAAAGAATTTA
AAAAACTGTTCACTATCCATTTCGAAACCGAAACGATTCAATTAAAAGATTCTAAAAAAGAAATTCCTAAATCCAATTTT
GAAAAAAAGAAGATTAAAAAATCTTTTTCTCAAAAAGAAAATTTTTGGGAACATTCAAGCGGAAGTTATAATTGGTATCA
AGCAAATCAAATTTGTAGTTCCAGAGATCTTAGACTCCCAACTATTGAAGAATTAGAAGACTCATATGAAAGTGGTGAAA
CAGAATCTTGGATCGAAAACGATTCCGACAAAAGGTATTGGTCCTCCACAATTTCTGTTGGTGAAAACGGTGCCTATAAC
TTGGATGTATTTAAAGGTGAAATCCGTTGGGATCATCTTAGCAATTACGCCAGAGTTCGTTGTCTAAAGTAA

Upstream 100 bases:

>100_bases
TCAAGTTCAGCTCTTATATTATTAATATTAAAAGAATTCTGAAAGAAATCAAACTACGTTTTATAATTGTTTTGAGATAT
ATTCGTTTAGGATCATTTCG

Downstream 100 bases:

>100_bases
TCTCTAGTTTCTTTAAAAAATTTCTTTTTGAATTTATTTTTTTCTGTAAACCCCCAATCACTTTTTGATTAAATAGCGCG
TGGTAGTTCTTACTTTTACA

Product: CagA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 663; Mature: 663

Protein sequence:

>663_residues
MRFSYLLFFLFLLWFPTKVFAQNKHSKIYIHKLTTESNLNSGLENRFRNGIINSILRNFEGKYTIVDDDSLSILLKQVET
LQKMDCSDEICMKQIADAIDANEVISGTISSQNGIIYVSLRNQIRDSKNLNYSIKSTFQMEFPEFLLDYYAGESGKKLLD
LQYNLDPHKVPASTNGNLSVTFLKIKPVPGTNLNSMEFKTSDKILVGVLEEIKEELDKAIQYSRSKEYTESIEIYNRILN
AFNERLSSESLKRLEPFVREIQTSITNNYNLEYKEKINNLDRNLFDSSPEDLEKRLSDYHSLLKEYSSQVPEKYRQLQIL
QSIQERKEKVELALFSLKEKEADQAYSKFDFSLSSKLYSNILKELPEKMDGSYKSFRETIEKKAETSEKTGRSHLSNRLE
TIYLLIEREFTVEALADAEEEKESHQNKIHEAFREGIITLAKSEFTNLTQIDRIKKEAKRVNQKLKVPISFQVQLNSLLH
EGLETKNPTQIVNSHLLGADWESKTGFFWGSAKSKLKEILEGTVQTGNPNKEFKKLFTIHFETETIQLKDSKKEIPKSNF
EKKKIKKSFSQKENFWEHSSGSYNWYQANQICSSRDLRLPTIEELEDSYESGETESWIENDSDKRYWSSTISVGENGAYN
LDVFKGEIRWDHLSNYARVRCLK

Sequences:

>Translated_663_residues
MRFSYLLFFLFLLWFPTKVFAQNKHSKIYIHKLTTESNLNSGLENRFRNGIINSILRNFEGKYTIVDDDSLSILLKQVET
LQKMDCSDEICMKQIADAIDANEVISGTISSQNGIIYVSLRNQIRDSKNLNYSIKSTFQMEFPEFLLDYYAGESGKKLLD
LQYNLDPHKVPASTNGNLSVTFLKIKPVPGTNLNSMEFKTSDKILVGVLEEIKEELDKAIQYSRSKEYTESIEIYNRILN
AFNERLSSESLKRLEPFVREIQTSITNNYNLEYKEKINNLDRNLFDSSPEDLEKRLSDYHSLLKEYSSQVPEKYRQLQIL
QSIQERKEKVELALFSLKEKEADQAYSKFDFSLSSKLYSNILKELPEKMDGSYKSFRETIEKKAETSEKTGRSHLSNRLE
TIYLLIEREFTVEALADAEEEKESHQNKIHEAFREGIITLAKSEFTNLTQIDRIKKEAKRVNQKLKVPISFQVQLNSLLH
EGLETKNPTQIVNSHLLGADWESKTGFFWGSAKSKLKEILEGTVQTGNPNKEFKKLFTIHFETETIQLKDSKKEIPKSNF
EKKKIKKSFSQKENFWEHSSGSYNWYQANQICSSRDLRLPTIEELEDSYESGETESWIENDSDKRYWSSTISVGENGAYN
LDVFKGEIRWDHLSNYARVRCLK
>Mature_663_residues
MRFSYLLFFLFLLWFPTKVFAQNKHSKIYIHKLTTESNLNSGLENRFRNGIINSILRNFEGKYTIVDDDSLSILLKQVET
LQKMDCSDEICMKQIADAIDANEVISGTISSQNGIIYVSLRNQIRDSKNLNYSIKSTFQMEFPEFLLDYYAGESGKKLLD
LQYNLDPHKVPASTNGNLSVTFLKIKPVPGTNLNSMEFKTSDKILVGVLEEIKEELDKAIQYSRSKEYTESIEIYNRILN
AFNERLSSESLKRLEPFVREIQTSITNNYNLEYKEKINNLDRNLFDSSPEDLEKRLSDYHSLLKEYSSQVPEKYRQLQIL
QSIQERKEKVELALFSLKEKEADQAYSKFDFSLSSKLYSNILKELPEKMDGSYKSFRETIEKKAETSEKTGRSHLSNRLE
TIYLLIEREFTVEALADAEEEKESHQNKIHEAFREGIITLAKSEFTNLTQIDRIKKEAKRVNQKLKVPISFQVQLNSLLH
EGLETKNPTQIVNSHLLGADWESKTGFFWGSAKSKLKEILEGTVQTGNPNKEFKKLFTIHFETETIQLKDSKKEIPKSNF
EKKKIKKSFSQKENFWEHSSGSYNWYQANQICSSRDLRLPTIEELEDSYESGETESWIENDSDKRYWSSTISVGENGAYN
LDVFKGEIRWDHLSNYARVRCLK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 77167; Mature: 77167

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSYLLFFLFLLWFPTKVFAQNKHSKIYIHKLTTESNLNSGLENRFRNGIINSILRNFE
CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
GKYTIVDDDSLSILLKQVETLQKMDCSDEICMKQIADAIDANEVISGTISSQNGIIYVSL
CCEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHCCEEECCCCEEEEEE
RNQIRDSKNLNYSIKSTFQMEFPEFLLDYYAGESGKKLLDLQYNLDPHKVPASTNGNLSV
HHHHCCCCCCCEEECHHEEHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEE
TFLKIKPVPGTNLNSMEFKTSDKILVGVLEEIKEELDKAIQYSRSKEYTESIEIYNRILN
EEEEEECCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
AFNERLSSESLKRLEPFVREIQTSITNNYNLEYKEKINNLDRNLFDSSPEDLEKRLSDYH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
SLLKEYSSQVPEKYRQLQILQSIQERKEKVELALFSLKEKEADQAYSKFDFSLSSKLYSN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILKELPEKMDGSYKSFRETIEKKAETSEKTGRSHLSNRLETIYLLIEREFTVEALADAEE
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHH
EKESHQNKIHEAFREGIITLAKSEFTNLTQIDRIKKEAKRVNQKLKVPISFQVQLNSLLH
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHH
EGLETKNPTQIVNSHLLGADWESKTGFFWGSAKSKLKEILEGTVQTGNPNKEFKKLFTIH
CCCCCCCHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCHHHHHEEEEE
FETETIQLKDSKKEIPKSNFEKKKIKKSFSQKENFWEHSSGSYNWYQANQICSSRDLRLP
EECEEEEECCCHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHCCCCCCCC
TIEELEDSYESGETESWIENDSDKRYWSSTISVGENGAYNLDVFKGEIRWDHLSNYARVR
CHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEECCEEHHHHCCHHHHE
CLK
ECC
>Mature Secondary Structure
MRFSYLLFFLFLLWFPTKVFAQNKHSKIYIHKLTTESNLNSGLENRFRNGIINSILRNFE
CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
GKYTIVDDDSLSILLKQVETLQKMDCSDEICMKQIADAIDANEVISGTISSQNGIIYVSL
CCEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHCCEEECCCCEEEEEE
RNQIRDSKNLNYSIKSTFQMEFPEFLLDYYAGESGKKLLDLQYNLDPHKVPASTNGNLSV
HHHHCCCCCCCEEECHHEEHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEE
TFLKIKPVPGTNLNSMEFKTSDKILVGVLEEIKEELDKAIQYSRSKEYTESIEIYNRILN
EEEEEECCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
AFNERLSSESLKRLEPFVREIQTSITNNYNLEYKEKINNLDRNLFDSSPEDLEKRLSDYH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
SLLKEYSSQVPEKYRQLQILQSIQERKEKVELALFSLKEKEADQAYSKFDFSLSSKLYSN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILKELPEKMDGSYKSFRETIEKKAETSEKTGRSHLSNRLETIYLLIEREFTVEALADAEE
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHH
EKESHQNKIHEAFREGIITLAKSEFTNLTQIDRIKKEAKRVNQKLKVPISFQVQLNSLLH
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHH
EGLETKNPTQIVNSHLLGADWESKTGFFWGSAKSKLKEILEGTVQTGNPNKEFKKLFTIH
CCCCCCCHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCHHHHHEEEEE
FETETIQLKDSKKEIPKSNFEKKKIKKSFSQKENFWEHSSGSYNWYQANQICSSRDLRLP
EECEEEEECCCHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHCCCCCCCC
TIEELEDSYESGETESWIENDSDKRYWSSTISVGENGAYNLDVFKGEIRWDHLSNYARVR
CHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEECCEEHHHHCCHHHHE
CLK
ECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA