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The map label for this gene is ycfF [C]

Identifier: 45658161

GI number: 45658161

Start: 2788440

End: 2788790

Strand: Direct

Name: ycfF [C]

Synonym: LIC12313

Alternate gene names: 45658161

Gene position: 2788440-2788790 (Clockwise)

Preceding gene: 45658160

Following gene: 45658162

Centisome position: 65.19

GC content: 37.04

Gene sequence:

>351_bases
ATGACAGATCCAAATTGTATCTTTTGTAAAATCATCCGTAAGGAAATCCCTTCCAAAGTAGTATTTGAAAACGATGAAAT
ATTAGCTTTTTATGATATTTCTCCCCAAGCTCCGGTTCATATAGTTTTTATTCCTAAAAAACACATTCCCTCTCTTTCTG
AAATCGAAAACGAAGATTCTCATCTGCTCGGAAATATCTTATTACAAATCCGTGATACCGCTAAAAATCTTGGATTTGCC
GAAAACGGCTATAGAGTTGTCAACAACACCGGAAAAAACGGGGGGCAAACTGTATTTCACATTCACTTTCATCTTTTAGC
AGAACGACGATTACACTGGCCTCCCGGTTAA

Upstream 100 bases:

>100_bases
AACTGATCTTTCCAATTTTCAGAACTTATACTCAAATCCTCCCCGGAGGAAACGTATCCGGCACATTAGGCGCTGCGGCG
CTTTGTATGGAGAATTTAGA

Downstream 100 bases:

>100_bases
ACAAAGGAACTTGATATTGAAACGAATTTTATTTGGCAGCTTAGTCAGCGTATTTGCACTTGGCTTTTTATTTTCTAAAC
TGGATCTGAGCGAATTCTCT

Product: HIT family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MTDPNCIFCKIIRKEIPSKVVFENDEILAFYDISPQAPVHIVFIPKKHIPSLSEIENEDSHLLGNILLQIRDTAKNLGFA
ENGYRVVNNTGKNGGQTVFHIHFHLLAERRLHWPPG

Sequences:

>Translated_116_residues
MTDPNCIFCKIIRKEIPSKVVFENDEILAFYDISPQAPVHIVFIPKKHIPSLSEIENEDSHLLGNILLQIRDTAKNLGFA
ENGYRVVNNTGKNGGQTVFHIHFHLLAERRLHWPPG
>Mature_115_residues
TDPNCIFCKIIRKEIPSKVVFENDEILAFYDISPQAPVHIVFIPKKHIPSLSEIENEDSHLLGNILLQIRDTAKNLGFAE
NGYRVVNNTGKNGGQTVFHIHFHLLAERRLHWPPG

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI4885413, Length=112, Percent_Identity=53.5714285714286, Blast_Score=136, Evalue=3e-33,
Organism=Homo sapiens, GI14211923, Length=111, Percent_Identity=48.6486486486487, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1787346, Length=106, Percent_Identity=48.1132075471698, Blast_Score=99, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17506713, Length=112, Percent_Identity=53.5714285714286, Blast_Score=137, Evalue=2e-33,
Organism=Saccharomyces cerevisiae, GI6320078, Length=107, Percent_Identity=40.1869158878505, Blast_Score=73, Evalue=9e-15,
Organism=Drosophila melanogaster, GI28574010, Length=112, Percent_Identity=51.7857142857143, Blast_Score=127, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24581222, Length=112, Percent_Identity=51.7857142857143, Blast_Score=127, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 13224; Mature: 13093

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS00892 HIT_1 ; PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDPNCIFCKIIRKEIPSKVVFENDEILAFYDISPQAPVHIVFIPKKHIPSLSEIENEDS
CCCCCEEHEEEHHHHCCCCEEECCCCEEEEEECCCCCCEEEEEECCCCCCCHHHHCCCCH
HLLGNILLQIRDTAKNLGFAENGYRVVNNTGKNGGQTVFHIHFHLLAERRLHWPPG
HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCC
>Mature Secondary Structure 
TDPNCIFCKIIRKEIPSKVVFENDEILAFYDISPQAPVHIVFIPKKHIPSLSEIENEDS
CCCCEEHEEEHHHHCCCCEEECCCCEEEEEECCCCCCEEEEEECCCCCCCHHHHCCCCH
HLLGNILLQIRDTAKNLGFAENGYRVVNNTGKNGGQTVFHIHFHLLAERRLHWPPG
HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]