BacMap

Definition	Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome chromosome I, complete sequence.
Accession	NC_005823
Length	4,277,185

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The map label for this gene is popC [H]

Identifier: 45658083

GI number: 45658083

Start: 2699585

End: 2700088

Strand: Direct

Name: popC [H]

Synonym: LIC12234

Alternate gene names: 45658083

Gene position: 2699585-2700088 (Clockwise)

Preceding gene: 304570497

Following gene: 45658085

Centisome position: 63.12

GC content: 29.96

Gene sequence:

>504_bases
TTGAGCAGAAATCAATTAACTATACTCCCGAAAGAAATTGAACAGCTGGTAAATTTAGAAAGTTTGCATTTACGAGATAA
CGAACTCACCACCTTACCTGAAGAAATTGGTATATTAAAAAATCTAAAGTATTTGGACATTTCCAGAAATCAAATCTCAA
ATTTTCCAAAAGAAATTCAGAAGTTAAAAAATTTAGAAGTATTGTTTTTAAATGGAAATAGTCTGTCAAACTTACCCGAA
GAAATCGGGGAATTAGAAAAATTAGGTATATTATACTTAAATAATAATCAACTTACAACCTTACCTAAAGAAATAGGACA
ATTAGAAAATTTAGTAAGCTTAAGTTTGTCCAGCAACAAACTAACATCTATTCCCGATGAATTAGGACAGTTAAAAAAGC
TTAGAATATTAAACTTATGGGACAATCCGACTTTAACGACCCCCGAGAGAAATATCCGAAAATTATTTCGTAATCAAGAA
ATAACGATCGAAATTTCCCCTTAA

Upstream 100 bases:

>100_bases
TTGTTTTCTTTTAGAACTACAATCCCAACCCAAAGAAGTAATAATTCATAAAAATCTATCCGATGCATTAAAAACACCTA
ACGAAGTACAGATTCTTGAT

Downstream 100 bases:

>100_bases
AAAATAAATCGGATCATTTAAATATCCAAATACTTGATTTATATAAATATCAAAATCTGCTTCAAACATTTCTTTCCTGC
CATTAAAACTTAGTATTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MSRNQLTILPKEIEQLVNLESLHLRDNELTTLPEEIGILKNLKYLDISRNQISNFPKEIQKLKNLEVLFLNGNSLSNLPE
EIGELEKLGILYLNNNQLTTLPKEIGQLENLVSLSLSSNKLTSIPDELGQLKKLRILNLWDNPTLTTPERNIRKLFRNQE
ITIEISP

Sequences:

>Translated_167_residues
MSRNQLTILPKEIEQLVNLESLHLRDNELTTLPEEIGILKNLKYLDISRNQISNFPKEIQKLKNLEVLFLNGNSLSNLPE
EIGELEKLGILYLNNNQLTTLPKEIGQLENLVSLSLSSNKLTSIPDELGQLKKLRILNLWDNPTLTTPERNIRKLFRNQE
ITIEISP
>Mature_166_residues
SRNQLTILPKEIEQLVNLESLHLRDNELTTLPEEIGILKNLKYLDISRNQISNFPKEIQKLKNLEVLFLNGNSLSNLPEE
IGELEKLGILYLNNNQLTTLPKEIGQLENLVSLSLSSNKLTSIPDELGQLKKLRILNLWDNPTLTTPERNIRKLFRNQEI
TIEISP

Specific function: Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway [H]

COG id: COG4886

COG function: function code S; Leucine-rich repeat (LRR) protein

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 22 LRR (leucine-rich) repeats [H]

Homologues:

Organism=Homo sapiens, GI95113664, Length=149, Percent_Identity=44.2953020134228, Blast_Score=105, Evalue=2e-23,
Organism=Homo sapiens, GI45827731, Length=166, Percent_Identity=40.9638554216867, Blast_Score=103, Evalue=6e-23,
Organism=Homo sapiens, GI45827729, Length=166, Percent_Identity=40.9638554216867, Blast_Score=103, Evalue=7e-23,
Organism=Homo sapiens, GI110825984, Length=170, Percent_Identity=35.8823529411765, Blast_Score=100, Evalue=6e-22,
Organism=Homo sapiens, GI16904383, Length=142, Percent_Identity=42.2535211267606, Blast_Score=100, Evalue=9e-22,
Organism=Homo sapiens, GI40217803, Length=143, Percent_Identity=38.4615384615385, Blast_Score=97, Evalue=5e-21,
Organism=Homo sapiens, GI41281398, Length=147, Percent_Identity=42.8571428571429, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI55770895, Length=142, Percent_Identity=39.4366197183099, Blast_Score=95, Evalue=3e-20,
Organism=Homo sapiens, GI8923909, Length=142, Percent_Identity=39.4366197183099, Blast_Score=95, Evalue=4e-20,
Organism=Homo sapiens, GI238908508, Length=163, Percent_Identity=38.0368098159509, Blast_Score=94, Evalue=5e-20,
Organism=Homo sapiens, GI197333706, Length=133, Percent_Identity=39.0977443609023, Blast_Score=94, Evalue=6e-20,
Organism=Homo sapiens, GI34222199, Length=133, Percent_Identity=39.0977443609023, Blast_Score=94, Evalue=6e-20,
Organism=Homo sapiens, GI14249428, Length=169, Percent_Identity=40.2366863905325, Blast_Score=94, Evalue=6e-20,
Organism=Homo sapiens, GI21361633, Length=148, Percent_Identity=39.8648648648649, Blast_Score=94, Evalue=7e-20,
Organism=Homo sapiens, GI187829877, Length=132, Percent_Identity=36.3636363636364, Blast_Score=92, Evalue=2e-19,
Organism=Homo sapiens, GI62241040, Length=132, Percent_Identity=36.3636363636364, Blast_Score=92, Evalue=2e-19,
Organism=Homo sapiens, GI187829871, Length=132, Percent_Identity=36.3636363636364, Blast_Score=92, Evalue=2e-19,
Organism=Homo sapiens, GI33859670, Length=176, Percent_Identity=35.2272727272727, Blast_Score=90, Evalue=9e-19,
Organism=Homo sapiens, GI256017174, Length=176, Percent_Identity=35.2272727272727, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI256017180, Length=176, Percent_Identity=35.2272727272727, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI154091020, Length=131, Percent_Identity=41.2213740458015, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI6912638, Length=144, Percent_Identity=39.5833333333333, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI21389431, Length=144, Percent_Identity=36.1111111111111, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI61742784, Length=146, Percent_Identity=39.041095890411, Blast_Score=87, Evalue=8e-18,
Organism=Homo sapiens, GI61742786, Length=146, Percent_Identity=39.041095890411, Blast_Score=87, Evalue=8e-18,
Organism=Homo sapiens, GI34577083, Length=148, Percent_Identity=39.8648648648649, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI122937315, Length=175, Percent_Identity=35.4285714285714, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI157743290, Length=137, Percent_Identity=35.7664233576642, Blast_Score=85, Evalue=3e-17,
Organism=Homo sapiens, GI63003903, Length=142, Percent_Identity=35.9154929577465, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI197333692, Length=135, Percent_Identity=34.8148148148148, Blast_Score=81, Evalue=3e-16,
Organism=Homo sapiens, GI21245134, Length=135, Percent_Identity=34.8148148148148, Blast_Score=81, Evalue=3e-16,
Organism=Homo sapiens, GI153792305, Length=163, Percent_Identity=33.7423312883436, Blast_Score=81, Evalue=3e-16,
Organism=Homo sapiens, GI167466264, Length=116, Percent_Identity=42.2413793103448, Blast_Score=80, Evalue=6e-16,
Organism=Homo sapiens, GI194394161, Length=130, Percent_Identity=40.7692307692308, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI19923729, Length=133, Percent_Identity=32.3308270676692, Blast_Score=78, Evalue=3e-15,
Organism=Homo sapiens, GI4503743, Length=146, Percent_Identity=37.6712328767123, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI30181233, Length=137, Percent_Identity=38.6861313868613, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI190014581, Length=142, Percent_Identity=35.9154929577465, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI299758423, Length=139, Percent_Identity=33.8129496402878, Blast_Score=74, Evalue=4e-14,
Organism=Homo sapiens, GI53729363, Length=139, Percent_Identity=33.8129496402878, Blast_Score=74, Evalue=5e-14,
Organism=Homo sapiens, GI53729359, Length=139, Percent_Identity=33.8129496402878, Blast_Score=74, Evalue=5e-14,
Organism=Homo sapiens, GI53729361, Length=139, Percent_Identity=33.8129496402878, Blast_Score=74, Evalue=5e-14,
Organism=Homo sapiens, GI33285015, Length=143, Percent_Identity=38.4615384615385, Blast_Score=73, Evalue=1e-13,
Organism=Homo sapiens, GI223005922, Length=161, Percent_Identity=31.6770186335404, Blast_Score=71, Evalue=4e-13,
Organism=Homo sapiens, GI52426787, Length=181, Percent_Identity=32.0441988950276, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI28872863, Length=91, Percent_Identity=42.8571428571429, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI171846278, Length=126, Percent_Identity=38.0952380952381, Blast_Score=64, Evalue=4e-11,
Organism=Homo sapiens, GI194306623, Length=124, Percent_Identity=37.0967741935484, Blast_Score=64, Evalue=6e-11,
Organism=Homo sapiens, GI194306621, Length=124, Percent_Identity=37.0967741935484, Blast_Score=64, Evalue=6e-11,
Organism=Homo sapiens, GI39930401, Length=124, Percent_Identity=37.0967741935484, Blast_Score=64, Evalue=6e-11,
Organism=Homo sapiens, GI194306618, Length=124, Percent_Identity=37.0967741935484, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71981160, Length=142, Percent_Identity=40.8450704225352, Blast_Score=102, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI71981152, Length=142, Percent_Identity=40.8450704225352, Blast_Score=102, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI71991531, Length=139, Percent_Identity=41.726618705036, Blast_Score=97, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI71991525, Length=139, Percent_Identity=41.726618705036, Blast_Score=97, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI71993778, Length=167, Percent_Identity=36.5269461077844, Blast_Score=89, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI71993783, Length=167, Percent_Identity=36.5269461077844, Blast_Score=89, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17552452, Length=144, Percent_Identity=37.5, Blast_Score=82, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71998904, Length=143, Percent_Identity=34.2657342657343, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71998900, Length=143, Percent_Identity=34.2657342657343, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17537883, Length=143, Percent_Identity=34.2657342657343, Blast_Score=74, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71985928, Length=179, Percent_Identity=34.0782122905028, Blast_Score=74, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI25143890, Length=170, Percent_Identity=32.3529411764706, Blast_Score=73, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI71999724, Length=111, Percent_Identity=35.1351351351351, Blast_Score=69, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI25150706, Length=111, Percent_Identity=35.1351351351351, Blast_Score=69, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI71999722, Length=111, Percent_Identity=35.1351351351351, Blast_Score=69, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17510303, Length=139, Percent_Identity=34.5323741007194, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322455, Length=163, Percent_Identity=36.8098159509202, Blast_Score=72, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6319298, Length=99, Percent_Identity=42.4242424242424, Blast_Score=69, Evalue=3e-13,
Organism=Drosophila melanogaster, GI116007092, Length=142, Percent_Identity=40.1408450704225, Blast_Score=96, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24650336, Length=142, Percent_Identity=40.1408450704225, Blast_Score=96, Evalue=1e-20,
Organism=Drosophila melanogaster, GI62472958, Length=142, Percent_Identity=40.1408450704225, Blast_Score=96, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24650330, Length=142, Percent_Identity=40.1408450704225, Blast_Score=96, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24650334, Length=142, Percent_Identity=40.1408450704225, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24650332, Length=142, Percent_Identity=40.1408450704225, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281362651, Length=142, Percent_Identity=40.1408450704225, Blast_Score=95, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281362653, Length=142, Percent_Identity=40.1408450704225, Blast_Score=95, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281362655, Length=142, Percent_Identity=40.1408450704225, Blast_Score=95, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281362657, Length=142, Percent_Identity=40.1408450704225, Blast_Score=95, Evalue=2e-20,
Organism=Drosophila melanogaster, GI221379725, Length=145, Percent_Identity=42.7586206896552, Blast_Score=94, Evalue=4e-20,
Organism=Drosophila melanogaster, GI221379722, Length=145, Percent_Identity=42.7586206896552, Blast_Score=94, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24641036, Length=125, Percent_Identity=43.2, Blast_Score=93, Evalue=9e-20,
Organism=Drosophila melanogaster, GI19922294, Length=160, Percent_Identity=36.875, Blast_Score=91, Evalue=2e-19,
Organism=Drosophila melanogaster, GI19922706, Length=137, Percent_Identity=37.2262773722628, Blast_Score=84, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24584802, Length=171, Percent_Identity=35.672514619883, Blast_Score=84, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24584804, Length=171, Percent_Identity=35.672514619883, Blast_Score=84, Evalue=4e-17,
Organism=Drosophila melanogaster, GI17933612, Length=150, Percent_Identity=36, Blast_Score=80, Evalue=6e-16,
Organism=Drosophila melanogaster, GI161078264, Length=172, Percent_Identity=34.8837209302326, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21358045, Length=172, Percent_Identity=34.8837209302326, Blast_Score=78, Evalue=2e-15,
Organism=Drosophila melanogaster, GI45551891, Length=172, Percent_Identity=34.8837209302326, Blast_Score=78, Evalue=3e-15,
Organism=Drosophila melanogaster, GI161078262, Length=172, Percent_Identity=34.8837209302326, Blast_Score=78, Evalue=3e-15,
Organism=Drosophila melanogaster, GI161078260, Length=172, Percent_Identity=34.8837209302326, Blast_Score=77, Evalue=4e-15,
Organism=Drosophila melanogaster, GI45550188, Length=144, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI18858105, Length=115, Percent_Identity=40.8695652173913, Blast_Score=70, Evalue=6e-13,
Organism=Drosophila melanogaster, GI19922622, Length=143, Percent_Identity=33.5664335664336, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21355269, Length=100, Percent_Identity=41, Blast_Score=64, Evalue=5e-11,
Organism=Drosophila melanogaster, GI161078441, Length=113, Percent_Identity=32.7433628318584, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001611 [H]

Pfam domain/function: PF00560 LRR_1 [H]

EC number: NA

Molecular weight: Translated: 19191; Mature: 19059

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRNQLTILPKEIEQLVNLESLHLRDNELTTLPEEIGILKNLKYLDISRNQISNFPKEIQ
CCCCCEEECHHHHHHHHCHHHEEECCCCCCCCHHHHHHHHCCEEEECCHHHHHHHHHHHH
KLKNLEVLFLNGNSLSNLPEEIGELEKLGILYLNNNQLTTLPKEIGQLENLVSLSLSSNK
HHCCCEEEEEECCCCCHHHHHHHHHHHCEEEEECCCCEEECHHHHHHHHHHHHHHCCCCC
LTSIPDELGQLKKLRILNLWDNPTLTTPERNIRKLFRNQEITIEISP
CCCCHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHCCCCEEEEECC
>Mature Secondary Structure 
SRNQLTILPKEIEQLVNLESLHLRDNELTTLPEEIGILKNLKYLDISRNQISNFPKEIQ
CCCCEEECHHHHHHHHCHHHEEECCCCCCCCHHHHHHHHCCEEEECCHHHHHHHHHHHH
KLKNLEVLFLNGNSLSNLPEEIGELEKLGILYLNNNQLTTLPKEIGQLENLVSLSLSSNK
HHCCCEEEEEECCCCCHHHHHHHHHHHCEEEEECCCCEEECHHHHHHHHHHHHHHCCCCC
LTSIPDELGQLKKLRILNLWDNPTLTTPERNIRKLFRNQEITIEISP
CCCCHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10792715; 11823852 [H]