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The map label for this gene is degT [H]

Identifier: 45658047

GI number: 45658047

Start: 2651131

End: 2652231

Strand: Reverse

Name: degT [H]

Synonym: LIC12198

Alternate gene names: 45658047

Gene position: 2652231-2651131 (Counterclockwise)

Preceding gene: 45658048

Following gene: 45658046

Centisome position: 62.01

GC content: 35.06

Gene sequence:

>1101_bases
ATGCAAGTAAGATATTCATATTTAAAACAACAATTTGAAAATTGCGATGATCTTTGGGATGAATTAAAAAGGTTTGTTCC
GACAGGAGATTTTACTTTAGGGAAACCTTTAATTGAATTTGAAAATCAATTCTCTAAGTTAATCGGTGCAAAGTATGCGA
TAGGGGTGAATTCGGGTACGGATGCTATTAAACTTTCCTTAAAAGCTCTTGGCGTAGGATTTGGTGACGAAGTAATTACG
ACGGCAAATACATTTGTAGCAACAGTGGGGGCGATTGCTGAACTCGGAGCCATTCCGGTGTTCGTAGATTGCGATGATAC
TTTTTGTATGAATGTAGATTTATTGGAAAAAGTCATTAGTAAAAAAACTAAAGCTATAGTTCCTGTTCATTTCACAGGTT
ATATGACTGATATGAGAAAATTGATGCCCATAGCAAAAAAGTATAACCTGCCTGTAGTAGAAGATGCTTGTCAGTCTATC
CTAGGGGCAATCGAGAACAAAAAAGCTGGGACTTGGGGAAATACGGGAGCCTTCTCTCTTCATCCTTTAAAAAATTTGAA
TGTTTGGTCGGATGGAGGTGTTATTGTTACGGATGACGAGGAACTTGCAAAAAATCTACGATTACTTAGAAATCACGGTT
TGATCGATCGTGATAACGTTGAAATTTTAGGATGTAATTCTAGGTTAGATACCATACAAGCTGTCGTTGGCAATTGGCTT
ATTCCTAATGCAGTAGCTATTTCAAATAAACGTATTGAAAATGCGAATTATTATGATCAACATTTAAGGAGTATTTCTCA
AATTACTCTTCCCCCAAGACCCAAAGATTTTAGGATCGTTTATCATTTATATATCGTTTTTGCAGAGAATCGGGATCATC
TCTTAGATTATTGTATAAAAAAAGGAATAGAGGCTAAGGTACATTATCCGATTCCAATTTATAGACAAAAGGCACTAACA
GCCTATGGATATAAAGAAGGTGATTTTCCTGTAACGGACGCACATACAAAAAAGATTATTACATTCCCTTGTGATCAACA
TCTTTCAAAGGAAGAAATGGATTATGTTGTTTCTATTATAAAAGAATTCTATTCTAAGTAA

Upstream 100 bases:

>100_bases
TAAAGAAAGCTTTTGATTCTGGTCTTCTTCCAAATTCTCTGACCGATGAAAAATATTTTAATATAAAACGTATGCAATCT
ATAAGTTTAAGGTAAGTAAA

Downstream 100 bases:

>100_bases
ATGATCCGATGATAAATATTCCTTATATAAATTTAGTTGAGCAGTGGAAAAACGAACGGGAAGAATTACTTCCGGTTCTT
GATTCCGTTTTAGGTTCCGG

Product: aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MQVRYSYLKQQFENCDDLWDELKRFVPTGDFTLGKPLIEFENQFSKLIGAKYAIGVNSGTDAIKLSLKALGVGFGDEVIT
TANTFVATVGAIAELGAIPVFVDCDDTFCMNVDLLEKVISKKTKAIVPVHFTGYMTDMRKLMPIAKKYNLPVVEDACQSI
LGAIENKKAGTWGNTGAFSLHPLKNLNVWSDGGVIVTDDEELAKNLRLLRNHGLIDRDNVEILGCNSRLDTIQAVVGNWL
IPNAVAISNKRIENANYYDQHLRSISQITLPPRPKDFRIVYHLYIVFAENRDHLLDYCIKKGIEAKVHYPIPIYRQKALT
AYGYKEGDFPVTDAHTKKIITFPCDQHLSKEEMDYVVSIIKEFYSK

Sequences:

>Translated_366_residues
MQVRYSYLKQQFENCDDLWDELKRFVPTGDFTLGKPLIEFENQFSKLIGAKYAIGVNSGTDAIKLSLKALGVGFGDEVIT
TANTFVATVGAIAELGAIPVFVDCDDTFCMNVDLLEKVISKKTKAIVPVHFTGYMTDMRKLMPIAKKYNLPVVEDACQSI
LGAIENKKAGTWGNTGAFSLHPLKNLNVWSDGGVIVTDDEELAKNLRLLRNHGLIDRDNVEILGCNSRLDTIQAVVGNWL
IPNAVAISNKRIENANYYDQHLRSISQITLPPRPKDFRIVYHLYIVFAENRDHLLDYCIKKGIEAKVHYPIPIYRQKALT
AYGYKEGDFPVTDAHTKKIITFPCDQHLSKEEMDYVVSIIKEFYSK
>Mature_366_residues
MQVRYSYLKQQFENCDDLWDELKRFVPTGDFTLGKPLIEFENQFSKLIGAKYAIGVNSGTDAIKLSLKALGVGFGDEVIT
TANTFVATVGAIAELGAIPVFVDCDDTFCMNVDLLEKVISKKTKAIVPVHFTGYMTDMRKLMPIAKKYNLPVVEDACQSI
LGAIENKKAGTWGNTGAFSLHPLKNLNVWSDGGVIVTDDEELAKNLRLLRNHGLIDRDNVEILGCNSRLDTIQAVVGNWL
IPNAVAISNKRIENANYYDQHLRSISQITLPPRPKDFRIVYHLYIVFAENRDHLLDYCIKKGIEAKVHYPIPIYRQKALT
AYGYKEGDFPVTDAHTKKIITFPCDQHLSKEEMDYVVSIIKEFYSK

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=370, Percent_Identity=28.6486486486486, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI2367285, Length=341, Percent_Identity=27.8592375366569, Blast_Score=129, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 41249; Mature: 41249

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVRYSYLKQQFENCDDLWDELKRFVPTGDFTLGKPLIEFENQFSKLIGAKYAIGVNSGT
CCCHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCC
DAIKLSLKALGVGFGDEVITTANTFVATVGAIAELGAIPVFVDCDDTFCMNVDLLEKVIS
HHHEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEECHHHHHHHHH
KKTKAIVPVHFTGYMTDMRKLMPIAKKYNLPVVEDACQSILGAIENKKAGTWGNTGAFSL
CHHCEEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
HPLKNLNVWSDGGVIVTDDEELAKNLRLLRNHGLIDRDNVEILGCNSRLDTIQAVVGNWL
CCCCCCCEECCCCEEEECCHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHCCCC
IPNAVAISNKRIENANYYDQHLRSISQITLPPRPKDFRIVYHLYIVFAENRDHLLDYCIK
CCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHH
KGIEAKVHYPIPIYRQKALTAYGYKEGDFPVTDAHTKKIITFPCDQHLSKEEMDYVVSII
CCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCHHCCCHHHHHHHHHHH
KEFYSK
HHHHCC
>Mature Secondary Structure
MQVRYSYLKQQFENCDDLWDELKRFVPTGDFTLGKPLIEFENQFSKLIGAKYAIGVNSGT
CCCHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCC
DAIKLSLKALGVGFGDEVITTANTFVATVGAIAELGAIPVFVDCDDTFCMNVDLLEKVIS
HHHEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEECHHHHHHHHH
KKTKAIVPVHFTGYMTDMRKLMPIAKKYNLPVVEDACQSILGAIENKKAGTWGNTGAFSL
CHHCEEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
HPLKNLNVWSDGGVIVTDDEELAKNLRLLRNHGLIDRDNVEILGCNSRLDTIQAVVGNWL
CCCCCCCEECCCCEEEECCHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHCCCC
IPNAVAISNKRIENANYYDQHLRSISQITLPPRPKDFRIVYHLYIVFAENRDHLLDYCIK
CCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHH
KGIEAKVHYPIPIYRQKALTAYGYKEGDFPVTDAHTKKIITFPCDQHLSKEEMDYVVSII
CCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCHHCCCHHHHHHHHHHH
KEFYSK
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]