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The map label for this gene is yfbE [C]

Identifier: 45658017

GI number: 45658017

Start: 2619061

End: 2620245

Strand: Reverse

Name: yfbE [C]

Synonym: LIC12168

Alternate gene names: 45658017

Gene position: 2620245-2619061 (Counterclockwise)

Preceding gene: 45658018

Following gene: 45658016

Centisome position: 61.26

GC content: 34.68

Gene sequence:

>1185_bases
GTGGATTTTAAAATTAAATGGTCAGGTAGATCGATTGATTATACCCAAGAAGAGATCGATACTGTTGTAGAAGTTATGAA
GACCGCAGATCCTCAGACCCAGGGTAAGTATTTGCAACAATTTGAAAGTGATTTTTCAAACTATTTAGATGGTCAGCCTT
GCTTCGGAGTCACCAATGCTACACATGCTCTGGAGTTAATTGCGGATTTAACCGGTTTAAAATCCGGTGATGAAGTAATT
ATTCCCGGCCATACTTACTGTGCATCTGCCATTCCTTTTGGAAGAACAGGAGCTACTTTGGTATGGGCTGATATTGATCC
TGAAACTTTTTTAATCTCGTTGGAATCAATCCAAAAGTTAGTCACAAATAAAACAAAAGCTATCGTGGTAGTACATTTAT
ATGGGATGATCATTCCGGATATATTGGAAATCGCTAAATTTGCAAAATCTAAAAATATTCTATTAATTGAAGATTGTGCA
CAATCGTTAGGGGCGGTATTAAACGGCAAGTCTTGCGGTACATTTGGAGATTTTGCCGCATTTAGTTTTCATGGTCAAAA
AAATATTACAACCATGGGTGAAGGAGGAATTCTTACTTTAAAGAATGTTTCTCTTGCTGATAAAGTTCCCGGCTTAAGAC
ATAACGGGCACGCACCCTTTCTAAATAAAACCGATTATTGGAAACCGGCTATGTCTAATGTGGATTTAGATTTGGATGGA
ATTTGGCCTCATAATTTTAGTCTAACGGAAGTTCAGGCTGCTTTAGGATCCGTTTTATTAAAACGAATTGCTTTATTAAC
GGAAGAAAGGAGGAAAAGAGCACAGAAATTTATAAATTCATTTAATGAATTTGAGGAATTATCTTTTCAAAAACAAAACG
ATTCCAAAGCTCATAGCTATCATCTTTTAGTAGCCAAATACAAAGCTGTAAAGAATGGGAAAAACAGAGACGATTTAATT
TCTATTTTGAGTAAGAAATATAAGATTCAAGTCATCGTTCAATACTATCCTTTGTACAGATATGATTTATTTAAAAAAAT
GGGTTATGCTAAAGCTGTTTGCCCGGCAAGCGATGATTTTTTTGATAATATGATTTCCTTTCCGTTTCATATTTGGATGA
ATGAAAATGATTTTGATTATATGATTGCGTCGATAAAACAAGCTCTAATAGAATTGCGAAGTTAA

Upstream 100 bases:

>100_bases
TGAAATTTGGCAGGGACATAAAAATAACGGAGAAGGTTTTCTCATTTCTCTTACTCGTTTGGAAAAGTTTCATTTATAGA
AATAATTTTAGGGGTTTAAA

Downstream 100 bases:

>100_bases
TTGTATGAATTTAGCGGTAATTCCGGCCAGGGGCGGTAGTAAGGGACTGCCGGGAAAAAATATAAAAAATCTATGTGGTA
AGCCCCTAATCGCTTGGTCT

Product: aspartate aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MDFKIKWSGRSIDYTQEEIDTVVEVMKTADPQTQGKYLQQFESDFSNYLDGQPCFGVTNATHALELIADLTGLKSGDEVI
IPGHTYCASAIPFGRTGATLVWADIDPETFLISLESIQKLVTNKTKAIVVVHLYGMIIPDILEIAKFAKSKNILLIEDCA
QSLGAVLNGKSCGTFGDFAAFSFHGQKNITTMGEGGILTLKNVSLADKVPGLRHNGHAPFLNKTDYWKPAMSNVDLDLDG
IWPHNFSLTEVQAALGSVLLKRIALLTEERRKRAQKFINSFNEFEELSFQKQNDSKAHSYHLLVAKYKAVKNGKNRDDLI
SILSKKYKIQVIVQYYPLYRYDLFKKMGYAKAVCPASDDFFDNMISFPFHIWMNENDFDYMIASIKQALIELRS

Sequences:

>Translated_394_residues
MDFKIKWSGRSIDYTQEEIDTVVEVMKTADPQTQGKYLQQFESDFSNYLDGQPCFGVTNATHALELIADLTGLKSGDEVI
IPGHTYCASAIPFGRTGATLVWADIDPETFLISLESIQKLVTNKTKAIVVVHLYGMIIPDILEIAKFAKSKNILLIEDCA
QSLGAVLNGKSCGTFGDFAAFSFHGQKNITTMGEGGILTLKNVSLADKVPGLRHNGHAPFLNKTDYWKPAMSNVDLDLDG
IWPHNFSLTEVQAALGSVLLKRIALLTEERRKRAQKFINSFNEFEELSFQKQNDSKAHSYHLLVAKYKAVKNGKNRDDLI
SILSKKYKIQVIVQYYPLYRYDLFKKMGYAKAVCPASDDFFDNMISFPFHIWMNENDFDYMIASIKQALIELRS
>Mature_394_residues
MDFKIKWSGRSIDYTQEEIDTVVEVMKTADPQTQGKYLQQFESDFSNYLDGQPCFGVTNATHALELIADLTGLKSGDEVI
IPGHTYCASAIPFGRTGATLVWADIDPETFLISLESIQKLVTNKTKAIVVVHLYGMIIPDILEIAKFAKSKNILLIEDCA
QSLGAVLNGKSCGTFGDFAAFSFHGQKNITTMGEGGILTLKNVSLADKVPGLRHNGHAPFLNKTDYWKPAMSNVDLDLDG
IWPHNFSLTEVQAALGSVLLKRIALLTEERRKRAQKFINSFNEFEELSFQKQNDSKAHSYHLLVAKYKAVKNGKNRDDLI
SILSKKYKIQVIVQYYPLYRYDLFKKMGYAKAVCPASDDFFDNMISFPFHIWMNENDFDYMIASIKQALIELRS

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=373, Percent_Identity=26.5415549597855, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI2367285, Length=346, Percent_Identity=24.2774566473988, Blast_Score=113, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 44360; Mature: 44360

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFKIKWSGRSIDYTQEEIDTVVEVMKTADPQTQGKYLQQFESDFSNYLDGQPCFGVTNA
CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCH
THALELIADLTGLKSGDEVIIPGHTYCASAIPFGRTGATLVWADIDPETFLISLESIQKL
HHHHHHHHHHHCCCCCCEEEECCCHHHHHCCCCCCCCCEEEEEECCCCCEEEEHHHHHHH
VTNKTKAIVVVHLYGMIIPDILEIAKFAKSKNILLIEDCAQSLGAVLNGKSCGTFGDFAA
HCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCE
FSFHGQKNITTMGEGGILTLKNVSLADKVPGLRHNGHAPFLNKTDYWKPAMSNVDLDLDG
EEECCCCCCEEECCCCEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
IWPHNFSLTEVQAALGSVLLKRIALLTEERRKRAQKFINSFNEFEELSFQKQNDSKAHSY
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHE
HLLVAKYKAVKNGKNRDDLISILSKKYKIQVIVQYYPLYRYDLFKKMGYAKAVCPASDDF
EEHHHHHHHHHCCCCHHHHHHHHHCCEEEEEEEEECCHHHHHHHHHCCCHHEECCCCCHH
FDNMISFPFHIWMNENDFDYMIASIKQALIELRS
HHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDFKIKWSGRSIDYTQEEIDTVVEVMKTADPQTQGKYLQQFESDFSNYLDGQPCFGVTNA
CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCH
THALELIADLTGLKSGDEVIIPGHTYCASAIPFGRTGATLVWADIDPETFLISLESIQKL
HHHHHHHHHHHCCCCCCEEEECCCHHHHHCCCCCCCCCEEEEEECCCCCEEEEHHHHHHH
VTNKTKAIVVVHLYGMIIPDILEIAKFAKSKNILLIEDCAQSLGAVLNGKSCGTFGDFAA
HCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCE
FSFHGQKNITTMGEGGILTLKNVSLADKVPGLRHNGHAPFLNKTDYWKPAMSNVDLDLDG
EEECCCCCCEEECCCCEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
IWPHNFSLTEVQAALGSVLLKRIALLTEERRKRAQKFINSFNEFEELSFQKQNDSKAHSY
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHE
HLLVAKYKAVKNGKNRDDLISILSKKYKIQVIVQYYPLYRYDLFKKMGYAKAVCPASDDF
EEHHHHHHHHHCCCCHHHHHHHHHCCEEEEEEEEECCHHHHHHHHHCCCHHEECCCCCHH
FDNMISFPFHIWMNENDFDYMIASIKQALIELRS
HHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]