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The map label for this gene is bphB [H]

Identifier: 45657906

GI number: 45657906

Start: 2491480

End: 2492595

Strand: Reverse

Name: bphB [H]

Synonym: LIC12058

Alternate gene names: 45657906

Gene position: 2492595-2491480 (Counterclockwise)

Preceding gene: 45657907

Following gene: 45657905

Centisome position: 58.28

GC content: 35.13

Gene sequence:

>1116_bases
ATGAAATCAAAACCGAAAATACTAATCGTAGACGATAAGCCTGAAAACCTGATCGCCCTAGAAGTTGTGTTAAAGGATTT
GGACGTAGAGTTAGTCAAAGCTTTAAGTGGAAACGAAGCCTTAAAGGCGATTTTACGTCATGAATTTGCTTTGGCGTTAT
TGGACATACAAATGCCAGAGATGGATGGGTATGAATTGGCAGGAATTATACGCGAAGAAAATAAAACGGCGGACTTACCC
TTTATTTTTATATCCGCAGTTTATACGGATAACCTGAATGTGTTTAAGGGGTATGAAAAAGGAGCGTTTAGCTTTATCAC
AAAACCGTTTCAACCAGAAATATTGATCAATAAGGTTCAGTTCTTTATAGACAAACATCTTCAAGATGCCGCATTACACG
AATTAAATGAAAGCCTGAGACAGAAAAATTTGGAATTAGAATATTCGAACAAAGAGTTGGATGCATTTACTTATTCCGTC
TCTCATGATTTAAAAGCTCCTTTGAGAGCTATAAGAGGTTATACAAAGATATTAAAGGAAGATTATGAAGAAAAATTTGA
TGAGGAGGGGAAAAGGGTTTTAGGTTTAATCATAGATAATTCTTTGAAGATGAGTAGTTTAATCGATAGTCTTTTGCTTT
TGTCTAAGTTAGGAAAAAAGGATATGAAGAAAAAGCCGATCGATATGAACCAATTGGTAAATACGATTCTACAAGAATTT
CAAGAAGATTTGAAAAACGGAAAAACAAGTTTAGAAATAAAAAAACTTCCTTCGATTATGGGAGACGCCGAATTGCTCAA
ACAAGTGCTGATTAATCTTATATCCAATGCGATTAAATATTCTTCTAAAAAGGAAAATCCAAAGGTAGAGATAGGTTCCT
CTACAAATGAAAAAGAAATTACGTATTACGTAAAAGATAACGGTGCCGGTTTTAATATGCAGTATGTGAATAAATTATTT
GGAGTATTTCAAAGGCTGCATGAAAACAGTGAATTTGAAGGAATAGGAATCGGCTTGGCGATCGTTCAACGAATCGTTCT
GCGTCACGGAGGAAGGGTTTGGGCCGAAGGAGAATTAGACCGTGGTGCAACATTTTTTTTCTCTTTACCGATATAA

Upstream 100 bases:

>100_bases
ATAGAGGCCGGTGCAAATGATTATATACCCAAGCCGGTTGATGTAGAACGTTTGTTTTCTTTGATGAGGGTTTGGTTAAG
TAAATAGAAGGTTAAAGATC

Downstream 100 bases:

>100_bases
AACTTAAAAAGTAAAATGGCACCTTTTAGGGGACTGACAAAACAGGGTCTTTACAGGCGAAGTCGTTGTCGTTTTTTGCA
GAATGAGGTAGCGTGTTATT

Product: histidine kinase response regulator hybrid protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MKSKPKILIVDDKPENLIALEVVLKDLDVELVKALSGNEALKAILRHEFALALLDIQMPEMDGYELAGIIREENKTADLP
FIFISAVYTDNLNVFKGYEKGAFSFITKPFQPEILINKVQFFIDKHLQDAALHELNESLRQKNLELEYSNKELDAFTYSV
SHDLKAPLRAIRGYTKILKEDYEEKFDEEGKRVLGLIIDNSLKMSSLIDSLLLLSKLGKKDMKKKPIDMNQLVNTILQEF
QEDLKNGKTSLEIKKLPSIMGDAELLKQVLINLISNAIKYSSKKENPKVEIGSSTNEKEITYYVKDNGAGFNMQYVNKLF
GVFQRLHENSEFEGIGIGLAIVQRIVLRHGGRVWAEGELDRGATFFFSLPI

Sequences:

>Translated_371_residues
MKSKPKILIVDDKPENLIALEVVLKDLDVELVKALSGNEALKAILRHEFALALLDIQMPEMDGYELAGIIREENKTADLP
FIFISAVYTDNLNVFKGYEKGAFSFITKPFQPEILINKVQFFIDKHLQDAALHELNESLRQKNLELEYSNKELDAFTYSV
SHDLKAPLRAIRGYTKILKEDYEEKFDEEGKRVLGLIIDNSLKMSSLIDSLLLLSKLGKKDMKKKPIDMNQLVNTILQEF
QEDLKNGKTSLEIKKLPSIMGDAELLKQVLINLISNAIKYSSKKENPKVEIGSSTNEKEITYYVKDNGAGFNMQYVNKLF
GVFQRLHENSEFEGIGIGLAIVQRIVLRHGGRVWAEGELDRGATFFFSLPI
>Mature_371_residues
MKSKPKILIVDDKPENLIALEVVLKDLDVELVKALSGNEALKAILRHEFALALLDIQMPEMDGYELAGIIREENKTADLP
FIFISAVYTDNLNVFKGYEKGAFSFITKPFQPEILINKVQFFIDKHLQDAALHELNESLRQKNLELEYSNKELDAFTYSV
SHDLKAPLRAIRGYTKILKEDYEEKFDEEGKRVLGLIIDNSLKMSSLIDSLLLLSKLGKKDMKKKPIDMNQLVNTILQEF
QEDLKNGKTSLEIKKLPSIMGDAELLKQVLINLISNAIKYSSKKENPKVEIGSSTNEKEITYYVKDNGAGFNMQYVNKLF
GVFQRLHENSEFEGIGIGLAIVQRIVLRHGGRVWAEGELDRGATFFFSLPI

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1786912, Length=219, Percent_Identity=28.7671232876712, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788549, Length=215, Percent_Identity=28.3720930232558, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI48994928, Length=235, Percent_Identity=24.6808510638298, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1790436, Length=222, Percent_Identity=26.1261261261261, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789149, Length=269, Percent_Identity=26.7657992565056, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790861, Length=229, Percent_Identity=25.3275109170306, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786600, Length=220, Percent_Identity=25.9090909090909, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790346, Length=218, Percent_Identity=27.9816513761468, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87081816, Length=250, Percent_Identity=24.8, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788393, Length=247, Percent_Identity=26.7206477732794, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1786783, Length=221, Percent_Identity=24.8868778280543, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI145693157, Length=246, Percent_Identity=23.5772357723577, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790551, Length=300, Percent_Identity=23.3333333333333, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788713, Length=227, Percent_Identity=23.3480176211454, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789808, Length=199, Percent_Identity=27.1356783919598, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 42146; Mature: 42146

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKPKILIVDDKPENLIALEVVLKDLDVELVKALSGNEALKAILRHEFALALLDIQMPE
CCCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCC
MDGYELAGIIREENKTADLPFIFISAVYTDNLNVFKGYEKGAFSFITKPFQPEILINKVQ
CCCCHHHHEEECCCCCCCCCEEEEEEEEECCCCEECCCCCCHHHHHCCCCCCHHHHHHHH
FFIDKHLQDAALHELNESLRQKNLELEYSNKELDAFTYSVSHDLKAPLRAIRGYTKILKE
HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHEEEEHHHHHHHHHHHHHHHHHHHHH
DYEEKFDEEGKRVLGLIIDNSLKMSSLIDSLLLLSKLGKKDMKKKPIDMNQLVNTILQEF
HHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHH
QEDLKNGKTSLEIKKLPSIMGDAELLKQVLINLISNAIKYSSKKENPKVEIGSSTNEKEI
HHHHHCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEE
TYYVKDNGAGFNMQYVNKLFGVFQRLHENSEFEGIGIGLAIVQRIVLRHGGRVWAEGELD
EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCCCEEECCCCC
RGATFFFSLPI
CCCEEEEECCC
>Mature Secondary Structure
MKSKPKILIVDDKPENLIALEVVLKDLDVELVKALSGNEALKAILRHEFALALLDIQMPE
CCCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCC
MDGYELAGIIREENKTADLPFIFISAVYTDNLNVFKGYEKGAFSFITKPFQPEILINKVQ
CCCCHHHHEEECCCCCCCCCEEEEEEEEECCCCEECCCCCCHHHHHCCCCCCHHHHHHHH
FFIDKHLQDAALHELNESLRQKNLELEYSNKELDAFTYSVSHDLKAPLRAIRGYTKILKE
HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHEEEEHHHHHHHHHHHHHHHHHHHHH
DYEEKFDEEGKRVLGLIIDNSLKMSSLIDSLLLLSKLGKKDMKKKPIDMNQLVNTILQEF
HHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHH
QEDLKNGKTSLEIKKLPSIMGDAELLKQVLINLISNAIKYSSKKENPKVEIGSSTNEKEI
HHHHHCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEE
TYYVKDNGAGFNMQYVNKLFGVFQRLHENSEFEGIGIGLAIVQRIVLRHGGRVWAEGELD
EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCCCEEECCCCC
RGATFFFSLPI
CCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]