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The map label for this gene is yjfH [C]

Identifier: 45657881

GI number: 45657881

Start: 2446873

End: 2447535

Strand: Direct

Name: yjfH [C]

Synonym: LIC12029

Alternate gene names: 45657881

Gene position: 2446873-2447535 (Clockwise)

Preceding gene: 45657880

Following gene: 45657882

Centisome position: 57.21

GC content: 35.44

Gene sequence:

>663_bases
TTGTATATAAAGGAAAATCCTGGAACAGAAATTGTAGAAAAAATATTAAACAAAATACCTTCCTTTGTTCAAGTTCATAA
AGTAAGCGTTTCTAAATTAGATTCTCTCGTTCCCGGAAGAAACCACCAAGGGATTGTAGCACTAAAAGCCCCTTCTAAAC
AAACTACATTCGACAAAAAAAATCTAGAGGAATTCCTTTCCGAAAAACCAGGAGCTTTTTTAATTTTAGATCGAATCCAA
GATCCCGGAAATTTAGGAAATATACTTAGAACCGCTGAATGTTTCGGAGTTACAAACATCATTCTTCCCGAAAGAGAATC
TGCAGGAATCACTCCTGTTGTCGAAAAAGTCGCGTCAGGCGCACTTTCGTTTTTAAAAATTTTTACAGTTAAAAATCTTG
CCAACACTTTAGAACTTTTAAAAGAAAACGGATATTGGATTGTTTCTACAAGCGATCGTGGAACAGAAGACTGGTCTAAA
CTACCCGATCTAAATGAACTCGTAATTTTAATGGGAAACGAAGGAGAGGGTATCAAAAGAATTCTTATGGAAAAATCAGA
CTTTGTACTTAGAATTCCAATGTACGGAAATCTTTCTTCTTTGAATGTGACCGTTGCCACTGGGATCGTTTTAGATAGAA
TCGTAAATCGTAAGTTCGGATAA

Upstream 100 bases:

>100_bases
GGAAAAAATAGCTAAGCCCGAATACATTTTTGGAAAGAGGACTCTGATTGAACTTACGGAGGCCAATCTAGGAAAGGAAC
ATTCATATCCTTTTATCCAA

Downstream 100 bases:

>100_bases
GAAAAGAAAGAATTTTCTTAACGTTTGAGTTTCTACACTTTCATAATTTATCTATAAAATTGCGATTTGTGGTAATCAAC
TTATATTCTTTTTATAGAAA

Product: tRNA/rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MYIKENPGTEIVEKILNKIPSFVQVHKVSVSKLDSLVPGRNHQGIVALKAPSKQTTFDKKNLEEFLSEKPGAFLILDRIQ
DPGNLGNILRTAECFGVTNIILPERESAGITPVVEKVASGALSFLKIFTVKNLANTLELLKENGYWIVSTSDRGTEDWSK
LPDLNELVILMGNEGEGIKRILMEKSDFVLRIPMYGNLSSLNVTVATGIVLDRIVNRKFG

Sequences:

>Translated_220_residues
MYIKENPGTEIVEKILNKIPSFVQVHKVSVSKLDSLVPGRNHQGIVALKAPSKQTTFDKKNLEEFLSEKPGAFLILDRIQ
DPGNLGNILRTAECFGVTNIILPERESAGITPVVEKVASGALSFLKIFTVKNLANTLELLKENGYWIVSTSDRGTEDWSK
LPDLNELVILMGNEGEGIKRILMEKSDFVLRIPMYGNLSSLNVTVATGIVLDRIVNRKFG
>Mature_220_residues
MYIKENPGTEIVEKILNKIPSFVQVHKVSVSKLDSLVPGRNHQGIVALKAPSKQTTFDKKNLEEFLSEKPGAFLILDRIQ
DPGNLGNILRTAECFGVTNIILPERESAGITPVVEKVASGALSFLKIFTVKNLANTLELLKENGYWIVSTSDRGTEDWSK
LPDLNELVILMGNEGEGIKRILMEKSDFVLRIPMYGNLSSLNVTVATGIVLDRIVNRKFG

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=204, Percent_Identity=29.9019607843137, Blast_Score=93, Evalue=2e-19,
Organism=Escherichia coli, GI1790623, Length=187, Percent_Identity=38.5026737967914, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI1788935, Length=190, Percent_Identity=25.2631578947368, Blast_Score=68, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17555908, Length=217, Percent_Identity=29.0322580645161, Blast_Score=72, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6324775, Length=169, Percent_Identity=36.094674556213, Blast_Score=88, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 24351; Mature: 24351

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIKENPGTEIVEKILNKIPSFVQVHKVSVSKLDSLVPGRNHQGIVALKAPSKQTTFDKK
CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHH
NLEEFLSEKPGAFLILDRIQDPGNLGNILRTAECFGVTNIILPERESAGITPVVEKVASG
HHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHH
ALSFLKIFTVKNLANTLELLKENGYWIVSTSDRGTEDWSKLPDLNELVILMGNEGEGIKR
HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHCCCCCCEEEEECCCCCHHHH
ILMEKSDFVLRIPMYGNLSSLNVTVATGIVLDRIVNRKFG
HHHCCCCCEEECCCCCCCCCCEEHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MYIKENPGTEIVEKILNKIPSFVQVHKVSVSKLDSLVPGRNHQGIVALKAPSKQTTFDKK
CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHH
NLEEFLSEKPGAFLILDRIQDPGNLGNILRTAECFGVTNIILPERESAGITPVVEKVASG
HHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHH
ALSFLKIFTVKNLANTLELLKENGYWIVSTSDRGTEDWSKLPDLNELVILMGNEGEGIKR
HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHCCCCCCEEEEECCCCCHHHH
ILMEKSDFVLRIPMYGNLSSLNVTVATGIVLDRIVNRKFG
HHHCCCCCEEECCCCCCCCCCEEHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA