Click here to switch to the map view.

The map label for this gene is ybbK [C]

Identifier: 45657708

GI number: 45657708

Start: 2239309

End: 2240241

Strand: Direct

Name: ybbK [C]

Synonym: LIC11845

Alternate gene names: 45657708

Gene position: 2239309-2240241 (Clockwise)

Preceding gene: 45657707

Following gene: 45657710

Centisome position: 52.35

GC content: 36.55

Gene sequence:

>933_bases
ATGGAAACGTTTCAAACCACATTTGTGATCATATTCTGGACTTTATTTGGAATTTATTTTACATATAAACTCTATCGTTC
CATTCGAATCGTTTCCGCTCAAGATTGTATCGTAGTTGAAAAATTTGGTAAATACAGTAGAACCCTACACGCTGGACTTC
ATCTACTTTGGCCATTTATCGAAAAAGACTCATATCATCATACTTTGAAGGAACAAGCCACAGACGTTCCTCCTCAAACC
TGTATTACGAAAGATAACGTAAAAGTGGAGATGGACGGAATTCTTTATTTAAAAGTTTTAGATCCTTATAAGGCAAGTTA
TGGAATCAACGATTACCAGTTTGCGGCTTCTCAACTTGCTCAAACGACAATGCGTGCCATTATAGGAACTATGGATTTAG
ACGTTACGTTTGAAACAAGAGACGCAATTAATAATAAAATTTTAGAAGTATTAGATCAAGCTGCTGAACCTTGGGGAATT
AAAGTCAATCGTTATGAAATCGTAAACATTACCCCTCCTAAGTCCATTTTAGAAGCAATGGAAAAAGAGAAAAAGGCTCA
GATTTCCAAGAAAGCACAAATTTCACTTTCGGAAGGGGATAGAGATGCAAAGATCAATCGATCTCTGGGATTCAAAGAAG
AAGCAATCAACAAATCTGAAGGAGAAAAACAAAAAAGAATCAACGAAGCGGAAGGGGTTGCCAAAGAAGTTGAATCCATT
GCGACCGCAACTGCAAAAGGTATCGAACTCATCGCCCAATCCATTCACTCTCAAGGAGGAAAGGATGCGATCAAACTACG
AATCGGTCAAAAATTTATTAAAGAATTTGAAAAAATCTCCGGTAAGAAAACGGAAATTGTGCTTCCTTTAAACCTAGCTA
ATTTCCGTTCGATTCTAAAATCCGTTTTAGGAAACGAAGATCAGAAAAATTAA

Upstream 100 bases:

>100_bases
GCGGAACTAGCCAACATAGCAGGTGTATTTGAAGGACTTTCCAAAGTAACCGGAAAGTTACCTGAAATCAAAACACAGAA
AGAAAAGGGAGGTCAATAAA

Downstream 100 bases:

>100_bases
ATCTGGAGTAGTTCCTACTTAACGTGAGTTCAGCTGAGAATAATTATCTAAAAGTATGAGTTCCTACAAATTTTAGAATT
CGTTCGTAAAATCGTGATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
METFQTTFVIIFWTLFGIYFTYKLYRSIRIVSAQDCIVVEKFGKYSRTLHAGLHLLWPFIEKDSYHHTLKEQATDVPPQT
CITKDNVKVEMDGILYLKVLDPYKASYGINDYQFAASQLAQTTMRAIIGTMDLDVTFETRDAINNKILEVLDQAAEPWGI
KVNRYEIVNITPPKSILEAMEKEKKAQISKKAQISLSEGDRDAKINRSLGFKEEAINKSEGEKQKRINEAEGVAKEVESI
ATATAKGIELIAQSIHSQGGKDAIKLRIGQKFIKEFEKISGKKTEIVLPLNLANFRSILKSVLGNEDQKN

Sequences:

>Translated_310_residues
METFQTTFVIIFWTLFGIYFTYKLYRSIRIVSAQDCIVVEKFGKYSRTLHAGLHLLWPFIEKDSYHHTLKEQATDVPPQT
CITKDNVKVEMDGILYLKVLDPYKASYGINDYQFAASQLAQTTMRAIIGTMDLDVTFETRDAINNKILEVLDQAAEPWGI
KVNRYEIVNITPPKSILEAMEKEKKAQISKKAQISLSEGDRDAKINRSLGFKEEAINKSEGEKQKRINEAEGVAKEVESI
ATATAKGIELIAQSIHSQGGKDAIKLRIGQKFIKEFEKISGKKTEIVLPLNLANFRSILKSVLGNEDQKN
>Mature_310_residues
METFQTTFVIIFWTLFGIYFTYKLYRSIRIVSAQDCIVVEKFGKYSRTLHAGLHLLWPFIEKDSYHHTLKEQATDVPPQT
CITKDNVKVEMDGILYLKVLDPYKASYGINDYQFAASQLAQTTMRAIIGTMDLDVTFETRDAINNKILEVLDQAAEPWGI
KVNRYEIVNITPPKSILEAMEKEKKAQISKKAQISLSEGDRDAKINRSLGFKEEAINKSEGEKQKRINEAEGVAKEVESI
ATATAKGIELIAQSIHSQGGKDAIKLRIGQKFIKEFEKISGKKTEIVLPLNLANFRSILKSVLGNEDQKN

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI7305503, Length=274, Percent_Identity=38.3211678832117, Blast_Score=207, Evalue=1e-53,
Organism=Homo sapiens, GI221316744, Length=204, Percent_Identity=29.4117647058824, Blast_Score=92, Evalue=9e-19,
Organism=Homo sapiens, GI21686995, Length=204, Percent_Identity=29.4117647058824, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI38016911, Length=220, Percent_Identity=29.0909090909091, Blast_Score=87, Evalue=2e-17,
Organism=Escherichia coli, GI1786697, Length=296, Percent_Identity=32.7702702702703, Blast_Score=178, Evalue=4e-46,
Organism=Caenorhabditis elegans, GI32564147, Length=283, Percent_Identity=40.9893992932862, Blast_Score=218, Evalue=2e-57,
Organism=Caenorhabditis elegans, GI17569497, Length=216, Percent_Identity=29.6296296296296, Blast_Score=104, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17569493, Length=228, Percent_Identity=31.140350877193, Blast_Score=104, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI193209764, Length=228, Percent_Identity=31.140350877193, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71989955, Length=184, Percent_Identity=31.5217391304348, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71989948, Length=184, Percent_Identity=31.5217391304348, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI71987612, Length=233, Percent_Identity=29.1845493562232, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI25153583, Length=233, Percent_Identity=29.1845493562232, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71987621, Length=232, Percent_Identity=29.3103448275862, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17569499, Length=224, Percent_Identity=29.4642857142857, Blast_Score=88, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI193210507, Length=206, Percent_Identity=28.1553398058252, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17570161, Length=206, Percent_Identity=28.1553398058252, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI32566490, Length=258, Percent_Identity=27.1317829457364, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17570459, Length=153, Percent_Identity=32.6797385620915, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71989963, Length=124, Percent_Identity=30.6451612903226, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI45550506, Length=277, Percent_Identity=39.7111913357401, Blast_Score=209, Evalue=3e-54,
Organism=Drosophila melanogaster, GI45556022, Length=212, Percent_Identity=31.1320754716981, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI281361631, Length=199, Percent_Identity=25.6281407035176, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI281361633, Length=199, Percent_Identity=25.6281407035176, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI28573263, Length=199, Percent_Identity=27.6381909547739, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI21356845, Length=202, Percent_Identity=26.2376237623762, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI18860517, Length=228, Percent_Identity=28.9473684210526, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI62484274, Length=223, Percent_Identity=29.1479820627803, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI62484448, Length=223, Percent_Identity=29.1479820627803, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI281365664, Length=223, Percent_Identity=29.1479820627803, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24657857, Length=223, Percent_Identity=29.1479820627803, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI281361635, Length=132, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 35084; Mature: 35084

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METFQTTFVIIFWTLFGIYFTYKLYRSIRIVSAQDCIVVEKFGKYSRTLHAGLHLLWPFI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHH
EKDSYHHTLKEQATDVPPQTCITKDNVKVEMDGILYLKVLDPYKASYGINDYQFAASQLA
HCCCHHHHHHHHHCCCCCHHCCCCCCCEEEECCEEEEEEECCHHHHCCCCHHHHHHHHHH
QTTMRAIIGTMDLDVTFETRDAINNKILEVLDQAAEPWGIKVNRYEIVNITPPKSILEAM
HHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCHHHHHHH
EKEKKAQISKKAQISLSEGDRDAKINRSLGFKEEAINKSEGEKQKRINEAEGVAKEVESI
HHHHHHHHHHHHEEEECCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
ATATAKGIELIAQSIHSQGGKDAIKLRIGQKFIKEFEKISGKKTEIVLPLNLANFRSILK
HHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
SVLGNEDQKN
HHHCCCCCCC
>Mature Secondary Structure
METFQTTFVIIFWTLFGIYFTYKLYRSIRIVSAQDCIVVEKFGKYSRTLHAGLHLLWPFI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHH
EKDSYHHTLKEQATDVPPQTCITKDNVKVEMDGILYLKVLDPYKASYGINDYQFAASQLA
HCCCHHHHHHHHHCCCCCHHCCCCCCCEEEECCEEEEEEECCHHHHCCCCHHHHHHHHHH
QTTMRAIIGTMDLDVTFETRDAINNKILEVLDQAAEPWGIKVNRYEIVNITPPKSILEAM
HHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCHHHHHHH
EKEKKAQISKKAQISLSEGDRDAKINRSLGFKEEAINKSEGEKQKRINEAEGVAKEVESI
HHHHHHHHHHHHEEEECCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
ATATAKGIELIAQSIHSQGGKDAIKLRIGQKFIKEFEKISGKKTEIVLPLNLANFRSILK
HHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
SVLGNEDQKN
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]