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The map label for this gene is ybbK [C]

Identifier: 45657707

GI number: 45657707

Start: 2238360

End: 2239307

Strand: Direct

Name: ybbK [C]

Synonym: LIC11844

Alternate gene names: 45657707

Gene position: 2238360-2239307 (Clockwise)

Preceding gene: 45657706

Following gene: 45657708

Centisome position: 52.33

GC content: 38.71

Gene sequence:

>948_bases
ATGTCCGCAGGGTTTATATTCACGTTATTTTTTATAGCGCTGGTTTATCTGATCCGTAAGACGTTTATCGTCGTTCCCCA
ACAGTATTGTTACGTCATAGAAAGACTAGGAGTGTTCAATGGCGCTTTAGAAGCAGGGTTTCATTTTCTTTGGCCAATCA
TAGAACTAGTCAAATACAGACAAAACCTAAAAGAAATAGCGATCGATATTCCACCTCAGATGTGTATTACAAAAGACAAC
GTTTCTATATCTGTAGATGGAATTCTTTATTTAAAAGTTGTAGATGCGTATAAGGCGTCTTATGCGATCGAAAACTATAT
GTTAGCAACTCAACAACTAGCCCAAACCACTCTTCGTTCTGAAATCGGTAAACTCATTTTAGATCAGACCTTTGCTGAAA
GAGATGATATTAATTCACACGTTGTGCGCGCTTTAGACGAAGCAACCGATCCATGGGGGATCAAAGTTACAAGATATGAA
ATCAAAAACATATCCCCGCCAAAGGAAATTCTTCACGAAATGGAAGAACAGGTAAAAGCAGAACGAGTGAAACGAGCAGA
GATTACCATTTCGGAAGGGGAAAAACTTTCTAGGATCAATCGTTCTGTGGGAGAAAGAGAAGAAGCGATCAACATCTCCG
AAGGAGAAAAGATGAAAAAAATCAACGAAGCAGAAGGTAAAGCTTTAGAAATCGAACTGATTGCCGCTGCAAAAGCAAAA
GGTATTCGTATGATCGCAGAATCAATTTCCAAAGAAGGTGGAGAAGAAGCAGTCAATCTACAAATTACGGAAGACTATTT
AACTGGACTCGGAGAAATTCTAAGTACATCTAAAACTACAATTCTACCTGCGGAACTAGCCAACATAGCAGGTGTATTTG
AAGGACTTTCCAAAGTAACCGGAAAGTTACCTGAAATCAAAACACAGAAAGAAAAGGGAGGTCAATAA

Upstream 100 bases:

>100_bases
AAAGCGAGAATTTTGAGCCGAGACAATCTTACATTTTTCGTCGAACCTTTGGAATTTCCAGAAAAGTAATTCTAATTTTA
AAATAAAAAAAGGAGATTTT

Downstream 100 bases:

>100_bases
AATGGAAACGTTTCAAACCACATTTGTGATCATATTCTGGACTTTATTTGGAATTTATTTTACATATAAACTCTATCGTT
CCATTCGAATCGTTTCCGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MSAGFIFTLFFIALVYLIRKTFIVVPQQYCYVIERLGVFNGALEAGFHFLWPIIELVKYRQNLKEIAIDIPPQMCITKDN
VSISVDGILYLKVVDAYKASYAIENYMLATQQLAQTTLRSEIGKLILDQTFAERDDINSHVVRALDEATDPWGIKVTRYE
IKNISPPKEILHEMEEQVKAERVKRAEITISEGEKLSRINRSVGEREEAINISEGEKMKKINEAEGKALEIELIAAAKAK
GIRMIAESISKEGGEEAVNLQITEDYLTGLGEILSTSKTTILPAELANIAGVFEGLSKVTGKLPEIKTQKEKGGQ

Sequences:

>Translated_315_residues
MSAGFIFTLFFIALVYLIRKTFIVVPQQYCYVIERLGVFNGALEAGFHFLWPIIELVKYRQNLKEIAIDIPPQMCITKDN
VSISVDGILYLKVVDAYKASYAIENYMLATQQLAQTTLRSEIGKLILDQTFAERDDINSHVVRALDEATDPWGIKVTRYE
IKNISPPKEILHEMEEQVKAERVKRAEITISEGEKLSRINRSVGEREEAINISEGEKMKKINEAEGKALEIELIAAAKAK
GIRMIAESISKEGGEEAVNLQITEDYLTGLGEILSTSKTTILPAELANIAGVFEGLSKVTGKLPEIKTQKEKGGQ
>Mature_314_residues
SAGFIFTLFFIALVYLIRKTFIVVPQQYCYVIERLGVFNGALEAGFHFLWPIIELVKYRQNLKEIAIDIPPQMCITKDNV
SISVDGILYLKVVDAYKASYAIENYMLATQQLAQTTLRSEIGKLILDQTFAERDDINSHVVRALDEATDPWGIKVTRYEI
KNISPPKEILHEMEEQVKAERVKRAEITISEGEKLSRINRSVGEREEAINISEGEKMKKINEAEGKALEIELIAAAKAKG
IRMIAESISKEGGEEAVNLQITEDYLTGLGEILSTSKTTILPAELANIAGVFEGLSKVTGKLPEIKTQKEKGGQ

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI7305503, Length=290, Percent_Identity=42.0689655172414, Blast_Score=234, Evalue=1e-61,
Organism=Homo sapiens, GI38016911, Length=216, Percent_Identity=36.1111111111111, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI221316744, Length=165, Percent_Identity=35.7575757575758, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI21686995, Length=165, Percent_Identity=35.7575757575758, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI7657615, Length=181, Percent_Identity=30.3867403314917, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1786697, Length=307, Percent_Identity=35.5048859934853, Blast_Score=206, Evalue=2e-54,
Organism=Caenorhabditis elegans, GI32564147, Length=267, Percent_Identity=46.0674157303371, Blast_Score=238, Evalue=4e-63,
Organism=Caenorhabditis elegans, GI17569499, Length=218, Percent_Identity=35.7798165137615, Blast_Score=114, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI71987612, Length=222, Percent_Identity=31.981981981982, Blast_Score=106, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI25153583, Length=222, Percent_Identity=31.981981981982, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI71989948, Length=166, Percent_Identity=37.3493975903614, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI71989955, Length=166, Percent_Identity=37.3493975903614, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI71987621, Length=222, Percent_Identity=31.981981981982, Blast_Score=104, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17569493, Length=196, Percent_Identity=33.6734693877551, Blast_Score=103, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI193209764, Length=195, Percent_Identity=31.7948717948718, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17570161, Length=183, Percent_Identity=34.4262295081967, Blast_Score=98, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI193210507, Length=183, Percent_Identity=34.4262295081967, Blast_Score=98, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI32566490, Length=173, Percent_Identity=37.5722543352601, Blast_Score=98, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17570459, Length=219, Percent_Identity=32.8767123287671, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17569497, Length=193, Percent_Identity=29.5336787564767, Blast_Score=88, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI71989963, Length=110, Percent_Identity=33.6363636363636, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI45550506, Length=274, Percent_Identity=42.7007299270073, Blast_Score=228, Evalue=5e-60,
Organism=Drosophila melanogaster, GI45556022, Length=213, Percent_Identity=35.6807511737089, Blast_Score=111, Evalue=7e-25,
Organism=Drosophila melanogaster, GI18860517, Length=201, Percent_Identity=34.8258706467662, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI62484448, Length=207, Percent_Identity=36.7149758454106, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI281365664, Length=207, Percent_Identity=36.7149758454106, Blast_Score=105, Evalue=6e-23,
Organism=Drosophila melanogaster, GI62484274, Length=207, Percent_Identity=36.7149758454106, Blast_Score=104, Evalue=8e-23,
Organism=Drosophila melanogaster, GI24657857, Length=209, Percent_Identity=36.3636363636364, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI21356845, Length=188, Percent_Identity=27.1276595744681, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI281361633, Length=192, Percent_Identity=26.0416666666667, Blast_Score=85, Evalue=7e-17,
Organism=Drosophila melanogaster, GI281361631, Length=192, Percent_Identity=26.0416666666667, Blast_Score=85, Evalue=7e-17,
Organism=Drosophila melanogaster, GI28573263, Length=166, Percent_Identity=29.5180722891566, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI281361635, Length=126, Percent_Identity=27.7777777777778, Blast_Score=68, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 35196; Mature: 35065

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGFIFTLFFIALVYLIRKTFIVVPQQYCYVIERLGVFNGALEAGFHFLWPIIELVKYR
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QNLKEIAIDIPPQMCITKDNVSISVDGILYLKVVDAYKASYAIENYMLATQQLAQTTLRS
HHHHHHHHCCCCCCEEEECCCEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIGKLILDQTFAERDDINSHVVRALDEATDPWGIKVTRYEIKNISPPKEILHEMEEQVKA
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
ERVKRAEITISEGEKLSRINRSVGEREEAINISEGEKMKKINEAEGKALEIELIAAAKAK
HHHHHHEEEECCCHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHCCCCEEEEEEEEHHHHH
GIRMIAESISKEGGEEAVNLQITEDYLTGLGEILSTSKTTILPAELANIAGVFEGLSKVT
HHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHH
GKLPEIKTQKEKGGQ
CCCCCCCCCHHCCCC
>Mature Secondary Structure 
SAGFIFTLFFIALVYLIRKTFIVVPQQYCYVIERLGVFNGALEAGFHFLWPIIELVKYR
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QNLKEIAIDIPPQMCITKDNVSISVDGILYLKVVDAYKASYAIENYMLATQQLAQTTLRS
HHHHHHHHCCCCCCEEEECCCEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIGKLILDQTFAERDDINSHVVRALDEATDPWGIKVTRYEIKNISPPKEILHEMEEQVKA
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
ERVKRAEITISEGEKLSRINRSVGEREEAINISEGEKMKKINEAEGKALEIELIAAAKAK
HHHHHHEEEECCCHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHCCCCEEEEEEEEHHHHH
GIRMIAESISKEGGEEAVNLQITEDYLTGLGEILSTSKTTILPAELANIAGVFEGLSKVT
HHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHH
GKLPEIKTQKEKGGQ
CCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]