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The map label for this gene is fecI [C]

Identifier: 45657682

GI number: 45657682

Start: 2210424

End: 2210978

Strand: Reverse

Name: fecI [C]

Synonym: LIC11817

Alternate gene names: 45657682

Gene position: 2210978-2210424 (Counterclockwise)

Preceding gene: 45657684

Following gene: 45657681

Centisome position: 51.69

GC content: 38.92

Gene sequence:

>555_bases
ATGTCAGCTAAAAAAGAAATTTGGGAAGAATGTTCCACTCTGATCCGTAAAACACGCGAAGGAGATCAAATTTCTTTTGA
AAAGTTTCTTAGACTCGTAACTGGAATTCTCAGATCATATCTCAGTCCACGTATTAGCAACGAAGAAGATCGAGAAGATT
TAATTCAAGAAATTCTAATCGGCCTTTATAAGGCCTGGGATTCTTATAGAGAAGATCGTCATCCTGCACCTTGGATTTTT
GCAATTGCCAGATACAAGACGATCGATTATCTACGGAAAAAGAAAAGTGGAGATCGTGTTTTCGCCACGGATAATTTAGA
ATTTTTTGCTTCACCCGAACCGATCGAAGAAGAACCGGAAAAGGCCAGGGAAATTTTAAAAAAATGGCTGGACGTTTTAG
ACGAACGACAAAAACAAATTCTCACCCATCTCAAACTAGACGGAATGAGTGTTCGAGAAGTTTCTGAAAAAACCGGACTT
TCCGAATCCAACGTCAAGGTAATTACTCACAGAGCGGTTCAAAAGATTCGAAAGCATTTTTCACTCGATCTCTAA

Upstream 100 bases:

>100_bases
TTTCTTCCTGGTCCAAACTGGAAGAGATCGGTTTTAGCTTTTTCTAAACTTATCCAAGTACAGTTTCTTATCTTTTCGAA
GGTTCTAAGTAATTAGTTAC

Downstream 100 bases:

>100_bases
CAAAAGCGTTGTGATCATCGTCCAAGGATTACTATGAATTCTGATTCTTTGAACGGTGTAGAATTTTTAGATTCTATTTC
TTCTATTTCCAAGGAAGAAT

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma-; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-E Factor Protein; ECF-Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Q Factor; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily Protein; RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor SigZ; RNA Polymerase Sigma Factor Protein; RNA Polymerase Sigma Factor NccH; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma Subunit; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MSAKKEIWEECSTLIRKTREGDQISFEKFLRLVTGILRSYLSPRISNEEDREDLIQEILIGLYKAWDSYREDRHPAPWIF
AIARYKTIDYLRKKKSGDRVFATDNLEFFASPEPIEEEPEKAREILKKWLDVLDERQKQILTHLKLDGMSVREVSEKTGL
SESNVKVITHRAVQKIRKHFSLDL

Sequences:

>Translated_184_residues
MSAKKEIWEECSTLIRKTREGDQISFEKFLRLVTGILRSYLSPRISNEEDREDLIQEILIGLYKAWDSYREDRHPAPWIF
AIARYKTIDYLRKKKSGDRVFATDNLEFFASPEPIEEEPEKAREILKKWLDVLDERQKQILTHLKLDGMSVREVSEKTGL
SESNVKVITHRAVQKIRKHFSLDL
>Mature_183_residues
SAKKEIWEECSTLIRKTREGDQISFEKFLRLVTGILRSYLSPRISNEEDREDLIQEILIGLYKAWDSYREDRHPAPWIFA
IARYKTIDYLRKKKSGDRVFATDNLEFFASPEPIEEEPEKAREILKKWLDVLDERQKQILTHLKLDGMSVREVSEKTGLS
ESNVKVITHRAVQKIRKHFSLDL

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21751; Mature: 21620

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAKKEIWEECSTLIRKTREGDQISFEKFLRLVTGILRSYLSPRISNEEDREDLIQEILI
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
GLYKAWDSYREDRHPAPWIFAIARYKTIDYLRKKKSGDRVFATDNLEFFASPEPIEEEPE
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHH
KAREILKKWLDVLDERQKQILTHLKLDGMSVREVSEKTGLSESNVKVITHRAVQKIRKHF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
SLDL
CCCC
>Mature Secondary Structure 
SAKKEIWEECSTLIRKTREGDQISFEKFLRLVTGILRSYLSPRISNEEDREDLIQEILI
CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
GLYKAWDSYREDRHPAPWIFAIARYKTIDYLRKKKSGDRVFATDNLEFFASPEPIEEEPE
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHH
KAREILKKWLDVLDERQKQILTHLKLDGMSVREVSEKTGLSESNVKVITHRAVQKIRKHF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
SLDL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA