Click here to switch to the map view.

The map label for this gene is 45657667

Identifier: 45657667

GI number: 45657667

Start: 2194939

End: 2195253

Strand: Direct

Name: 45657667

Synonym: LIC11801

Alternate gene names: NA

Gene position: 2194939-2195253 (Clockwise)

Preceding gene: 45657664

Following gene: 45657668

Centisome position: 51.32

GC content: 35.56

Gene sequence:

>315_bases
GTGGAAAATTTTAATACAGAAATTCTTACCGAAGGCACAACTTGTACGATTAAAATTCAAGGTAGTATCAGCCTCAAAAA
CGCATTTGCCCTCAAGGAATTGATTATCAAAAAACACGGAGAGGGTTTTACGGAAATTATTCTGGATTTTTCAGGAGACG
CATACTTGGACTCCTCCGGAATCGGAGCCATTTTTAATTCCCAAAAATACGTAACAGAAAGAAATGGTTCCCTCAAACTC
AAAAATATCAGTAGAGACGTAATGACCATTTTAAAAATCGCGAATTTAGACAAACATTTGGATATTATTCGTTAG

Upstream 100 bases:

>100_bases
TATTTGTAAAAAATTTCTTATAGGTAAGTAGTTCTTAAAAAATTTTGTTTACCTAGTAAATCAATCGAATACGATTTAAA
CTGATTCGAGCAAAATAGAC

Downstream 100 bases:

>100_bases
GCGCTCTTCTGGAAATCCATCGAATCTATACAAATAGCCCTCTTCGAAACTTCACCTATATTCTTAAAAATTCAGAAACT
TCTCAAACAATTTCGATTGA

Product: anti-sigma factor antagonist

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MENFNTEILTEGTTCTIKIQGSISLKNAFALKELIIKKHGEGFTEIILDFSGDAYLDSSGIGAIFNSQKYVTERNGSLKL
KNISRDVMTILKIANLDKHLDIIR

Sequences:

>Translated_104_residues
MENFNTEILTEGTTCTIKIQGSISLKNAFALKELIIKKHGEGFTEIILDFSGDAYLDSSGIGAIFNSQKYVTERNGSLKL
KNISRDVMTILKIANLDKHLDIIR
>Mature_104_residues
MENFNTEILTEGTTCTIKIQGSISLKNAFALKELIIKKHGEGFTEIILDFSGDAYLDSSGIGAIFNSQKYVTERNGSLKL
KNISRDVMTILKIANLDKHLDIIR

Specific function: Unknown

COG id: COG1366

COG function: function code T; Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11578; Mature: 11578

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS50801 STAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENFNTEILTEGTTCTIKIQGSISLKNAFALKELIIKKHGEGFTEIILDFSGDAYLDSSG
CCCCCCEEEECCCEEEEEEECCEEECHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCC
IGAIFNSQKYVTERNGSLKLKNISRDVMTILKIANLDKHLDIIR
CCEEECCCEEEEECCCCEEEECCCHHHHHHHHHHCCCCCCEECC
>Mature Secondary Structure
MENFNTEILTEGTTCTIKIQGSISLKNAFALKELIIKKHGEGFTEIILDFSGDAYLDSSG
CCCCCCEEEECCCEEEEEEECCEEECHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCC
IGAIFNSQKYVTERNGSLKLKNISRDVMTILKIANLDKHLDIIR
CCEEECCCEEEEECCCCEEEECCCHHHHHHHHHHCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA