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The map label for this gene is ydhD [H]

Identifier: 45657586

GI number: 45657586

Start: 2095430

End: 2097037

Strand: Reverse

Name: ydhD [H]

Synonym: LIC11720

Alternate gene names: 45657586

Gene position: 2097037-2095430 (Counterclockwise)

Preceding gene: 45657591

Following gene: 45657585

Centisome position: 49.03

GC content: 36.13

Gene sequence:

>1608_bases
ATGGCACACAAACAAGAAGACATACAACCCATTTCTAACGATTCTCTAAAACCAGAACCTAAATACAAAATCCTAGTTTA
TTCTTTGAGTTGGTTTTTATTATCTGCACTTTCCTTTTTTTTAGGGATTCATCTTCTAAAAAAGGGGGATTCCGCTCTCT
CCAACGAAAACTTTCGTTCCAGCTCCATCGGAATCGTAGACGAAATTCGAAATTTTTTTCCCAATCAGAAAACTACAAAC
TCATCTGAAACAGAAAATTCCTCTTCCACTCAATCAGAATCGAAATCTAATTTTTTTTCATTCAATAAAGACGACCAGGA
TATGCCCGAAGCTACCTTACTTCCAAAGGCTGACGAAAATACTTCTTTTAGAGCTTCCACTTGGTTTTCTGATTACGAAG
CGATGAAAAAAACGGTTCATCTTTATAATGAAATTCATCCTTTTATCTATGGAATGAAAGGGCGCGAGACCAATAACGGA
GACCTTTATTCTAGTTGGGGAAGTTCTCAAAAACACGAACGCATTTCTGAACTTCGTAAACTCAATCCGAACATTAAGAT
CATTCCCACGATCTTTCGTTGGGAAAATAAATATGAAAAAATTTCCGAAAACATTGGAATGAATGGGCGTAACGACATTC
GAGATAAACATCTTTCTAATATTCTTTATGAATTAGACACATACGGCTACGACGGGATCGATATAGACTACGAAGGAATG
AGCTGCGAAAAAAAAGAAAAGTTCGAAGAATTTATAGTTATTCTTTCTAAGGAAATTCACAAACGAGGAAAAATTCTTTC
GGTTGCAGTTCATCCAAAAACTCCTGCCAAAAAGGAATCTATGAAAGCCTGTAAAGGTTTAAAAGATAAAATCAAAATGG
ATTACGCGGAAAATTGGAGAGGGCCTATGACTCATGATTATGCCTTTCTCGCAAAGTATGCAGATCGCATTAAGATTATG
GCATATGAATTACATCCTAGAAAATATAGAAATCCTGGTCCTGGTCCACAGGCTCCCAACACTTGGATCAAAAGTATCAT
TGAATATGCGAAGGCAAGGGTTCCGGCTAAACAATTATATATGGCAATTCCTACTTATGGTTACGATTGGGCCTTAAATT
GTAATTCTAAAATCAAATCTGTTTATTATCAGGACGCAGTTCGTAAAAAAGAATTCGGAATTCACAGACAACCGACTAAC
ATAGATCAGATTCTTGCGAACACTAAAAACTCCAGTTCTTGGATTAATCTTTCCAAATTTTCTTGGGTTCATACCGGCAA
AACTTACGAAGATCCAAGCATCTGGTATAAATCGGAAGGTTGTGATCGTGTAGCTTTTTATATGAACCGTAAAGCATTCG
AAGACAAGATGAATCTTTTAAGACAATACGACCTAGGTGGTTTTTCTTTTTGGCAATTGATCAGCGATAACGATCCTGGA
ATCAACGATTATCTAGAATTATTGGTTTCTAATAAATTGCCTCCTGTGGAAAAAATAAAAGAACCGGTTCAAGATCCAAA
TAAATCTAAAGTAGAGCCTACCAATCCAGAAGAAGCAAAGATAGATTCTCAAGATCATTCTGAAAAGTTTGTCGGAAAAC
AAGGTTAA

Upstream 100 bases:

>100_bases
TCTCATCTAATAAATTTTTGGAAGTGAGTTTCCAGTTCATCGATTTAAGAAACTTCTTTATTTTCTTAGTTTTTGATTCG
ATAATGAAACTATAAAACCG

Downstream 100 bases:

>100_bases
CACTTTAATCACAGATTCAACTTCGGAGGCGGCAAAAATTTTGCTGAAAGGAGGGCTTGTCGTTTTTCCTACGGAAACGG
TCTATGGCATCGGAGCTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 535; Mature: 534

Protein sequence:

>535_residues
MAHKQEDIQPISNDSLKPEPKYKILVYSLSWFLLSALSFFLGIHLLKKGDSALSNENFRSSSIGIVDEIRNFFPNQKTTN
SSETENSSSTQSESKSNFFSFNKDDQDMPEATLLPKADENTSFRASTWFSDYEAMKKTVHLYNEIHPFIYGMKGRETNNG
DLYSSWGSSQKHERISELRKLNPNIKIIPTIFRWENKYEKISENIGMNGRNDIRDKHLSNILYELDTYGYDGIDIDYEGM
SCEKKEKFEEFIVILSKEIHKRGKILSVAVHPKTPAKKESMKACKGLKDKIKMDYAENWRGPMTHDYAFLAKYADRIKIM
AYELHPRKYRNPGPGPQAPNTWIKSIIEYAKARVPAKQLYMAIPTYGYDWALNCNSKIKSVYYQDAVRKKEFGIHRQPTN
IDQILANTKNSSSWINLSKFSWVHTGKTYEDPSIWYKSEGCDRVAFYMNRKAFEDKMNLLRQYDLGGFSFWQLISDNDPG
INDYLELLVSNKLPPVEKIKEPVQDPNKSKVEPTNPEEAKIDSQDHSEKFVGKQG

Sequences:

>Translated_535_residues
MAHKQEDIQPISNDSLKPEPKYKILVYSLSWFLLSALSFFLGIHLLKKGDSALSNENFRSSSIGIVDEIRNFFPNQKTTN
SSETENSSSTQSESKSNFFSFNKDDQDMPEATLLPKADENTSFRASTWFSDYEAMKKTVHLYNEIHPFIYGMKGRETNNG
DLYSSWGSSQKHERISELRKLNPNIKIIPTIFRWENKYEKISENIGMNGRNDIRDKHLSNILYELDTYGYDGIDIDYEGM
SCEKKEKFEEFIVILSKEIHKRGKILSVAVHPKTPAKKESMKACKGLKDKIKMDYAENWRGPMTHDYAFLAKYADRIKIM
AYELHPRKYRNPGPGPQAPNTWIKSIIEYAKARVPAKQLYMAIPTYGYDWALNCNSKIKSVYYQDAVRKKEFGIHRQPTN
IDQILANTKNSSSWINLSKFSWVHTGKTYEDPSIWYKSEGCDRVAFYMNRKAFEDKMNLLRQYDLGGFSFWQLISDNDPG
INDYLELLVSNKLPPVEKIKEPVQDPNKSKVEPTNPEEAKIDSQDHSEKFVGKQG
>Mature_534_residues
AHKQEDIQPISNDSLKPEPKYKILVYSLSWFLLSALSFFLGIHLLKKGDSALSNENFRSSSIGIVDEIRNFFPNQKTTNS
SETENSSSTQSESKSNFFSFNKDDQDMPEATLLPKADENTSFRASTWFSDYEAMKKTVHLYNEIHPFIYGMKGRETNNGD
LYSSWGSSQKHERISELRKLNPNIKIIPTIFRWENKYEKISENIGMNGRNDIRDKHLSNILYELDTYGYDGIDIDYEGMS
CEKKEKFEEFIVILSKEIHKRGKILSVAVHPKTPAKKESMKACKGLKDKIKMDYAENWRGPMTHDYAFLAKYADRIKIMA
YELHPRKYRNPGPGPQAPNTWIKSIIEYAKARVPAKQLYMAIPTYGYDWALNCNSKIKSVYYQDAVRKKEFGIHRQPTNI
DQILANTKNSSSWINLSKFSWVHTGKTYEDPSIWYKSEGCDRVAFYMNRKAFEDKMNLLRQYDLGGFSFWQLISDNDPGI
NDYLELLVSNKLPPVEKIKEPVQDPNKSKVEPTNPEEAKIDSQDHSEKFVGKQG

Specific function: Unknown

COG id: COG3858

COG function: function code R; Predicted glycosyl hydrolase

Gene ontology:

Cell location: Spore wall (Probable). Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011583
- InterPro:   IPR001223
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF00704 Glyco_hydro_18; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 61906; Mature: 61774

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS01095 CHITINASE_18

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHKQEDIQPISNDSLKPEPKYKILVYSLSWFLLSALSFFLGIHLLKKGDSALSNENFRS
CCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
SSIGIVDEIRNFFPNQKTTNSSETENSSSTQSESKSNFFSFNKDDQDMPEATLLPKADEN
CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEECCCCCCC
TSFRASTWFSDYEAMKKTVHLYNEIHPFIYGMKGRETNNGDLYSSWGSSQKHERISELRK
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
LNPNIKIIPTIFRWENKYEKISENIGMNGRNDIRDKHLSNILYELDTYGYDGIDIDYEGM
CCCCCEEEEHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCC
SCEKKEKFEEFIVILSKEIHKRGKILSVAVHPKTPAKKESMKACKGLKDKIKMDYAENWR
CCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCHHHHHHCHHHCCC
GPMTHDYAFLAKYADRIKIMAYELHPRKYRNPGPGPQAPNTWIKSIIEYAKARVPAKQLY
CCCCHHHHHHHHHHHHEEEEEEEECCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHE
MAIPTYGYDWALNCNSKIKSVYYQDAVRKKEFGIHRQPTNIDQILANTKNSSSWINLSKF
EECCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCEEEECCE
SWVHTGKTYEDPSIWYKSEGCDRVAFYMNRKAFEDKMNLLRQYDLGGFSFWQLISDNDPG
EEEECCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEECCCCCC
INDYLELLVSNKLPPVEKIKEPVQDPNKSKVEPTNPEEAKIDSQDHSEKFVGKQG
HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC
>Mature Secondary Structure 
AHKQEDIQPISNDSLKPEPKYKILVYSLSWFLLSALSFFLGIHLLKKGDSALSNENFRS
CCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
SSIGIVDEIRNFFPNQKTTNSSETENSSSTQSESKSNFFSFNKDDQDMPEATLLPKADEN
CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEECCCCCCC
TSFRASTWFSDYEAMKKTVHLYNEIHPFIYGMKGRETNNGDLYSSWGSSQKHERISELRK
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
LNPNIKIIPTIFRWENKYEKISENIGMNGRNDIRDKHLSNILYELDTYGYDGIDIDYEGM
CCCCCEEEEHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCC
SCEKKEKFEEFIVILSKEIHKRGKILSVAVHPKTPAKKESMKACKGLKDKIKMDYAENWR
CCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCHHHHHHCHHHCCC
GPMTHDYAFLAKYADRIKIMAYELHPRKYRNPGPGPQAPNTWIKSIIEYAKARVPAKQLY
CCCCHHHHHHHHHHHHEEEEEEEECCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHE
MAIPTYGYDWALNCNSKIKSVYYQDAVRKKEFGIHRQPTNIDQILANTKNSSSWINLSKF
EECCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCEEEECCE
SWVHTGKTYEDPSIWYKSEGCDRVAFYMNRKAFEDKMNLLRQYDLGGFSFWQLISDNDPG
EEEECCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEECCCCCC
INDYLELLVSNKLPPVEKIKEPVQDPNKSKVEPTNPEEAKIDSQDHSEKFVGKQG
HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377; 12177332 [H]