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The map label for this gene is xseB

Identifier: 45657462

GI number: 45657462

Start: 1949939

End: 1950226

Strand: Reverse

Name: xseB

Synonym: LIC11590

Alternate gene names: 45657462

Gene position: 1950226-1949939 (Counterclockwise)

Preceding gene: 45657463

Following gene: 45657461

Centisome position: 45.6

GC content: 33.33

Gene sequence:

>288_bases
ATGGTGGAGACAAAATCTAAAATTTCATTTGAAGACGCTCTGATGGAACTGGAACAAATTGCAGAAAAACTAGAACGACA
AGATTTCAGTTTAGAAGAATCTTTGAAAGCGTATGAAAGAGGAATGGAACTTAAAAAAATCTGTCAGGGAATTTTAGACA
CTGCGGAAGGAAAGATAGAAGCTCTTACCAAAGACGAATCTAAAAAAACAAATAAAACTGGTTTTAGAGGGGAATCGAAA
ACGACAGAAACAAAAAATAATACTGCACAAGAAGAAGATTTATTTTAG

Upstream 100 bases:

>100_bases
GGAAAAATCATACGATCTCCGGAAGAAACAAAACCGGAAGAAGAATTGCAAGTTTTACTTTCAGGTGGAACGATGCAAGT
GATTAGAAAAGGAAAATAAA

Downstream 100 bases:

>100_bases
AACTTGTCCCAAAACCTCAAAAAATTTTTACACGATAATTCTTTAGAAATTTTTAATAAAATGCAGTAGTTCCTACAAGT
TAAGTCGCATTTGGCAATTT

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MVETKSKISFEDALMELEQIAEKLERQDFSLEESLKAYERGMELKKICQGILDTAEGKIEALTKDESKKTNKTGFRGESK
TTETKNNTAQEEDLF

Sequences:

>Translated_95_residues
MVETKSKISFEDALMELEQIAEKLERQDFSLEESLKAYERGMELKKICQGILDTAEGKIEALTKDESKKTNKTGFRGESK
TTETKNNTAQEEDLF
>Mature_95_residues
MVETKSKISFEDALMELEQIAEKLERQDFSLEESLKAYERGMELKKICQGILDTAEGKIEALTKDESKKTNKTGFRGESK
TTETKNNTAQEEDLF

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_LEPIC (Q72RZ8)

Other databases:

- EMBL:   AE016823
- RefSeq:   YP_001548.1
- ProteinModelPortal:   Q72RZ8
- SMR:   Q72RZ8
- GeneID:   2771536
- GenomeReviews:   AE016823_GR
- KEGG:   lic:LIC11590
- HOGENOM:   HBG728416
- OMA:   CEELLRT
- ProtClustDB:   PRK14069
- BioCyc:   LINT267671:LIC_11590-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 10854; Mature: 10854

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVETKSKISFEDALMELEQIAEKLERQDFSLEESLKAYERGMELKKICQGILDTAEGKIE
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHH
ALTKDESKKTNKTGFRGESKTTETKNNTAQEEDLF
HHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVETKSKISFEDALMELEQIAEKLERQDFSLEESLKAYERGMELKKICQGILDTAEGKIE
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHH
ALTKDESKKTNKTGFRGESKTTETKNNTAQEEDLF
HHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA