| Definition | Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_005823 |
| Length | 4,277,185 |
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The map label for this gene is trg [C]
Identifier: 45657284
GI number: 45657284
Start: 1729200
End: 1731740
Strand: Reverse
Name: trg [C]
Synonym: LIC11407
Alternate gene names: 45657284
Gene position: 1731740-1729200 (Counterclockwise)
Preceding gene: 45657285
Following gene: 45657283
Centisome position: 40.49
GC content: 34.32
Gene sequence:
>2541_bases ATGAACGACAACATTACAAATTCGATTCGTAAATTCATTCTTCATTTTATTTTAGTAACCGAAGTAGTTGGATTTACTCT TACGATAGGTATAGCCATTGTATTTTTTACTACATTTTTAGAAATGGATTCAGATCAACTTAAGATTGCAATTCGTATCA CTTTGACCACTGCAGTTTTTACTCTAATGTTCGCAATTTTTTCGGATACTTGTAGATTAAGGCCCATCCATAAATATCTT TTTATGTTAGAAAAAGGAATCACAGATAAACAGATCTCACTCAATGCACAGAAATCGATATTTCGGATTCCTTTTTTTCA TTCCATAGACATTGGCCTTAGGATATTAGTCACCGCTTTCGTAGTGATTTATCTACTCAGCCAATTTATAATTTTAGAAA CGGCGGATTACTACAATCTGGGATCTCTTACTCTCATTATGTGCCTTCTTGTAGGGGTATATACTTTTTTTGCTTCAGAA CAACTAACTTTCAATCTAATCAAATCGGGGGTGTTCGACCACATTAATATTTCCTCTTTGACTAAGGTTCGCCTAACCCG CTCTCTTACGATAACCTTTATTTTTATTGTTTTCGTTCTTGCGATCACTGTTTCGGGTCTAGTTTTTAAACTCAACTATT CCGGAATCAGAAAATCTTATTTCAATCAAATGAACAATATGAACGAAACCCTCAGCATTTTCACAGAATCCATTTTCGAA GAGGTTCGGTCAGACTCTGAAAAACTTAAAAGTGATCCTTTTTTTATTTCTTTAATTAAAAATTATAAAAAAGACGAAAT TCAGAATTTTTTGAAAACACTTTTAGAACGTTCTCCAAAATATGAATCCATTTCGCTTATCAAACCGGAAAACCAATCTT GGAAAATTATAGCGGGAACCGAAACTCTAAGTCAAAATACAGATTTTATTTTAAAGGACTTTCAACTTCCTTCGGAAAAC GTAGTTTTAGAAACAATTTCTAAACATAAAACTTTCTTTATCAAACCCACCTCTTCCCCTATTTCTGAAACCCCAGTTCT TTTAATTTTGGAAACAATTTTTGAAAACTCGAACCTTTTCATTGTGTATTCTCTTAAAATAACAGACCTTACCCAAAAAA TCATCGGTTCGATTCAAATCGGGAAATCTGGTCATATAGGTTTTATGGATCGTGAAGAAACAGTAATTAATCATATTAAT TCTTCATTATATTTAAAAAAATTAAAAAACATTCCTTTTTACGAACAAATTAAAAATTATAATTATGACGTTCCAATTCG GTTTCTTTCTGACGGAAAATATAGATATATGATTTTCCATAAAAATAAAAAATATGATTTTATTACGTTTACTTCGATCG AAAACGAAGAGATCGCAGGAGAAGCGATCATTTGTGTTTACGTTATGACCGGAATTTCTTTTTTCGGTCTTTCTTTTATT GGAATTCTGATCTATCTGATTCTTAGAAAAAGGATTCGCCCTTTGGAAGAAAGTAGGAAAGTTTTAGAATCTATGACGGG AGGAGATCTCACCAAAGGACTCCAAGTTTTTTCAATGGATGAAATCGGAGAGATGAGTGTTTCGATCAATCTATTCAATA AAAAAATAAAAAAGATCTTAAACAAAATTATTACCGCATCCGAAAATCTTGCAGGGTCTTCGGATGAGATGTCTAGGGCT CTAAATTTTATCTCTGCAAACACTCAGAACCAAGCGGCCTCTTCGGAAGAAATTTCCTCTTCGATCGAAGAAATAGTCGC CGGTATGAACGGAGTAGAAATCCAAACCAACGAGCAAGTCTCCTTGTTGAATCAACTCGCTTCTGATATGAATCAATTTT CAGATTCGATTCATAAAATTTCGCATAACATGGAAAAGACGATGTCCGAAGTGGAAAGAATTACGGAAGAAGCAAAAAAA GGAGGAAATTCTTTGGAACTGACCAATCATTCGATCACCAAGATCAGTAATAGTTCTGAGGATATTTCAGGGGTTATAGA AATCATCAATACGATTTCGGAACAGATTCATCTTCTGGCGTTGAATGCAGCGATTGAAGCCGCAAGAGCTGGCAACGCGG GTAGAGGTTTTGCTGTCGTGGCCGATGAAATTTCTAAACTAGCAGATAAGACCACAAACAGTATTAAAGATATTGAACGT ATTATTAAAAATAATGAAACTGAAATTGGAGCCGGGATTCAAAATATCACGGATACGGTCAACGTTATTACTGGTATCAT AGAAGGGATTTCCGAAATCAATCACCAGATGAAGGTAGTAAATCAATTTATGGAAAATCAACTTTCCAAAAACGATCAGA TGAATCTCACCACAAAAGAAGTCAAAGATAGGGCTGACGTAATTCAAATTTCGGTTCAAGAACAGAAAAACGCGATTGAA GAAATTTCGAAAACGACCGCTACAATCAACGAACTCAATCAATCCTCCGCAGCCTCTTCCGAGGAACTTAGCTCCAATTC GATAGGTTTAGCAAAATTAGCCGAAGATTTAAAACACGAAGTAGTATTTTTTAAACTTTAG
Upstream 100 bases:
>100_bases TTCATTTTATCTAATATTTTTCGCTTTGTCCTTGTATTAATTAAAGTAAATCTATAAACTTATACAACACACATAACGTA TACTTTTCGGAACAAAAATC
Downstream 100 bases:
>100_bases TTCTAAGGATGGTTAACTTAAAGTATTTAAAAAGCACAAGAAACCCTTGATTTTTCCGCCCTCCGTTTTACTCTGCGCTT ATGGAATGGGAAAAAGTACT
Product: putative methyl-accepting chemotaxis transmembrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 846; Mature: 846
Protein sequence:
>846_residues MNDNITNSIRKFILHFILVTEVVGFTLTIGIAIVFFTTFLEMDSDQLKIAIRITLTTAVFTLMFAIFSDTCRLRPIHKYL FMLEKGITDKQISLNAQKSIFRIPFFHSIDIGLRILVTAFVVIYLLSQFIILETADYYNLGSLTLIMCLLVGVYTFFASE QLTFNLIKSGVFDHINISSLTKVRLTRSLTITFIFIVFVLAITVSGLVFKLNYSGIRKSYFNQMNNMNETLSIFTESIFE EVRSDSEKLKSDPFFISLIKNYKKDEIQNFLKTLLERSPKYESISLIKPENQSWKIIAGTETLSQNTDFILKDFQLPSEN VVLETISKHKTFFIKPTSSPISETPVLLILETIFENSNLFIVYSLKITDLTQKIIGSIQIGKSGHIGFMDREETVINHIN SSLYLKKLKNIPFYEQIKNYNYDVPIRFLSDGKYRYMIFHKNKKYDFITFTSIENEEIAGEAIICVYVMTGISFFGLSFI GILIYLILRKRIRPLEESRKVLESMTGGDLTKGLQVFSMDEIGEMSVSINLFNKKIKKILNKIITASENLAGSSDEMSRA LNFISANTQNQAASSEEISSSIEEIVAGMNGVEIQTNEQVSLLNQLASDMNQFSDSIHKISHNMEKTMSEVERITEEAKK GGNSLELTNHSITKISNSSEDISGVIEIINTISEQIHLLALNAAIEAARAGNAGRGFAVVADEISKLADKTTNSIKDIER IIKNNETEIGAGIQNITDTVNVITGIIEGISEINHQMKVVNQFMENQLSKNDQMNLTTKEVKDRADVIQISVQEQKNAIE EISKTTATINELNQSSAASSEELSSNSIGLAKLAEDLKHEVVFFKL
Sequences:
>Translated_846_residues MNDNITNSIRKFILHFILVTEVVGFTLTIGIAIVFFTTFLEMDSDQLKIAIRITLTTAVFTLMFAIFSDTCRLRPIHKYL FMLEKGITDKQISLNAQKSIFRIPFFHSIDIGLRILVTAFVVIYLLSQFIILETADYYNLGSLTLIMCLLVGVYTFFASE QLTFNLIKSGVFDHINISSLTKVRLTRSLTITFIFIVFVLAITVSGLVFKLNYSGIRKSYFNQMNNMNETLSIFTESIFE EVRSDSEKLKSDPFFISLIKNYKKDEIQNFLKTLLERSPKYESISLIKPENQSWKIIAGTETLSQNTDFILKDFQLPSEN VVLETISKHKTFFIKPTSSPISETPVLLILETIFENSNLFIVYSLKITDLTQKIIGSIQIGKSGHIGFMDREETVINHIN SSLYLKKLKNIPFYEQIKNYNYDVPIRFLSDGKYRYMIFHKNKKYDFITFTSIENEEIAGEAIICVYVMTGISFFGLSFI GILIYLILRKRIRPLEESRKVLESMTGGDLTKGLQVFSMDEIGEMSVSINLFNKKIKKILNKIITASENLAGSSDEMSRA LNFISANTQNQAASSEEISSSIEEIVAGMNGVEIQTNEQVSLLNQLASDMNQFSDSIHKISHNMEKTMSEVERITEEAKK GGNSLELTNHSITKISNSSEDISGVIEIINTISEQIHLLALNAAIEAARAGNAGRGFAVVADEISKLADKTTNSIKDIER IIKNNETEIGAGIQNITDTVNVITGIIEGISEINHQMKVVNQFMENQLSKNDQMNLTTKEVKDRADVIQISVQEQKNAIE EISKTTATINELNQSSAASSEELSSNSIGLAKLAEDLKHEVVFFKL >Mature_846_residues MNDNITNSIRKFILHFILVTEVVGFTLTIGIAIVFFTTFLEMDSDQLKIAIRITLTTAVFTLMFAIFSDTCRLRPIHKYL FMLEKGITDKQISLNAQKSIFRIPFFHSIDIGLRILVTAFVVIYLLSQFIILETADYYNLGSLTLIMCLLVGVYTFFASE QLTFNLIKSGVFDHINISSLTKVRLTRSLTITFIFIVFVLAITVSGLVFKLNYSGIRKSYFNQMNNMNETLSIFTESIFE EVRSDSEKLKSDPFFISLIKNYKKDEIQNFLKTLLERSPKYESISLIKPENQSWKIIAGTETLSQNTDFILKDFQLPSEN VVLETISKHKTFFIKPTSSPISETPVLLILETIFENSNLFIVYSLKITDLTQKIIGSIQIGKSGHIGFMDREETVINHIN SSLYLKKLKNIPFYEQIKNYNYDVPIRFLSDGKYRYMIFHKNKKYDFITFTSIENEEIAGEAIICVYVMTGISFFGLSFI GILIYLILRKRIRPLEESRKVLESMTGGDLTKGLQVFSMDEIGEMSVSINLFNKKIKKILNKIITASENLAGSSDEMSRA LNFISANTQNQAASSEEISSSIEEIVAGMNGVEIQTNEQVSLLNQLASDMNQFSDSIHKISHNMEKTMSEVERITEEAKK GGNSLELTNHSITKISNSSEDISGVIEIINTISEQIHLLALNAAIEAARAGNAGRGFAVVADEISKLADKTTNSIKDIER IIKNNETEIGAGIQNITDTVNVITGIIEGISEINHQMKVVNQFMENQLSKNDQMNLTTKEVKDRADVIQISVQEQKNAIE EISKTTATINELNQSSAASSEELSSNSIGLAKLAEDLKHEVVFFKL
Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 methyl-accepting transducer domain [H]
Homologues:
Organism=Escherichia coli, GI1787690, Length=377, Percent_Identity=27.0557029177719, Blast_Score=124, Evalue=3e-29, Organism=Escherichia coli, GI1788194, Length=368, Percent_Identity=23.0978260869565, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI2367378, Length=365, Percent_Identity=24.3835616438356, Blast_Score=113, Evalue=4e-26, Organism=Escherichia coli, GI1788195, Length=303, Percent_Identity=25.0825082508251, Blast_Score=105, Evalue=1e-23, Organism=Escherichia coli, GI1789453, Length=233, Percent_Identity=27.0386266094421, Blast_Score=90, Evalue=7e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004010 - InterPro: IPR003122 - InterPro: IPR004089 - InterPro: IPR003660 - InterPro: IPR022094 [H]
Pfam domain/function: PF02743 Cache_1; PF00672 HAMP; PF12332 McpA_N; PF00015 MCPsignal; PF02203 TarH [H]
EC number: NA
Molecular weight: Translated: 95366; Mature: 95366
Theoretical pI: Translated: 5.72; Mature: 5.72
Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDNITNSIRKFILHFILVTEVVGFTLTIGIAIVFFTTFLEMDSDQLKIAIRITLTTAVF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHHHH TLMFAIFSDTCRLRPIHKYLFMLEKGITDKQISLNAQKSIFRIPFFHSIDIGLRILVTAF HHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEECCHHHCEEECCCEEEHHHHHHHHHHHH VVIYLLSQFIILETADYYNLGSLTLIMCLLVGVYTFFASEQLTFNLIKSGVFDHINISSL HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHH TKVRLTRSLTITFIFIVFVLAITVSGLVFKLNYSGIRKSYFNQMNNMNETLSIFTESIFE HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHH EVRSDSEKLKSDPFFISLIKNYKKDEIQNFLKTLLERSPKYESISLIKPENQSWKIIAGT HHHCCHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEECC ETLSQNTDFILKDFQLPSENVVLETISKHKTFFIKPTSSPISETPVLLILETIFENSNLF CHHCCCCCEEEEECCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEE IVYSLKITDLTQKIIGSIQIGKSGHIGFMDREETVINHINSSLYLKKLKNIPFYEQIKNY EEEEEEHHHHHHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCC NYDVPIRFLSDGKYRYMIFHKNKKYDFITFTSIENEEIAGEAIICVYVMTGISFFGLSFI CCCCCEEEECCCCEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH GILIYLILRKRIRPLEESRKVLESMTGGDLTKGLQVFSMDEIGEMSVSINLFNKKIKKIL HHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHCCCEEEHHCCCCCEEEHHHHHHHHHHHH NKIITASENLAGSSDEMSRALNFISANTQNQAASSEEISSSIEEIVAGMNGVEIQTNEQV HHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCHHH SLLNQLASDMNQFSDSIHKISHNMEKTMSEVERITEEAKKGGNSLELTNHSITKISNSSE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHCCCCCCH DISGVIEIINTISEQIHLLALNAAIEAARAGNAGRGFAVVADEISKLADKTTNSIKDIER HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH IIKNNETEIGAGIQNITDTVNVITGIIEGISEINHQMKVVNQFMENQLSKNDQMNLTTKE HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH VKDRADVIQISVQEQKNAIEEISKTTATINELNQSSAASSEELSSNSIGLAKLAEDLKHE HHCCHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHC VVFFKL EEEEEC >Mature Secondary Structure MNDNITNSIRKFILHFILVTEVVGFTLTIGIAIVFFTTFLEMDSDQLKIAIRITLTTAVF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHHHH TLMFAIFSDTCRLRPIHKYLFMLEKGITDKQISLNAQKSIFRIPFFHSIDIGLRILVTAF HHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEECCHHHCEEECCCEEEHHHHHHHHHHHH VVIYLLSQFIILETADYYNLGSLTLIMCLLVGVYTFFASEQLTFNLIKSGVFDHINISSL HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHH TKVRLTRSLTITFIFIVFVLAITVSGLVFKLNYSGIRKSYFNQMNNMNETLSIFTESIFE HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHH EVRSDSEKLKSDPFFISLIKNYKKDEIQNFLKTLLERSPKYESISLIKPENQSWKIIAGT HHHCCHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEECC ETLSQNTDFILKDFQLPSENVVLETISKHKTFFIKPTSSPISETPVLLILETIFENSNLF CHHCCCCCEEEEECCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEE IVYSLKITDLTQKIIGSIQIGKSGHIGFMDREETVINHINSSLYLKKLKNIPFYEQIKNY EEEEEEHHHHHHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCC NYDVPIRFLSDGKYRYMIFHKNKKYDFITFTSIENEEIAGEAIICVYVMTGISFFGLSFI CCCCCEEEECCCCEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH GILIYLILRKRIRPLEESRKVLESMTGGDLTKGLQVFSMDEIGEMSVSINLFNKKIKKIL HHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHCCCEEEHHCCCCCEEEHHHHHHHHHHHH NKIITASENLAGSSDEMSRALNFISANTQNQAASSEEISSSIEEIVAGMNGVEIQTNEQV HHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCHHH SLLNQLASDMNQFSDSIHKISHNMEKTMSEVERITEEAKKGGNSLELTNHSITKISNSSE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHCCCCCCH DISGVIEIINTISEQIHLLALNAAIEAARAGNAGRGFAVVADEISKLADKTTNSIKDIER HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH IIKNNETEIGAGIQNITDTVNVITGIIEGISEINHQMKVVNQFMENQLSKNDQMNLTTKE HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH VKDRADVIQISVQEQKNAIEEISKTTATINELNQSSAASSEELSSNSIGLAKLAEDLKHE HHCCHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHC VVFFKL EEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA