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The map label for this gene is insF1 [C]

Identifier: 45657224

GI number: 45657224

Start: 1661149

End: 1661775

Strand: Reverse

Name: insF1 [C]

Synonym: LIC11346

Alternate gene names: 45657224

Gene position: 1661775-1661149 (Counterclockwise)

Preceding gene: 45657225

Following gene: 45657223

Centisome position: 38.85

GC content: 39.39

Gene sequence:

>627_bases
ATGGAGCGAGGGAAAGTTCGAAAAGCGATGAAACACTGTAAAATTAGCGGGAAACAGAGGAAGCAGTTTAGACCTTTGAC
AACGAATTCAAAACACGGAGGTAGAATTGCTCCTGATTTAGTTCAAAGGAAATTTCATCCGAACGAGCAGAACCGAATTT
GGGTGTCTGATGTTACATTCATTCGGACTTCGTTTGGTTGGAGTTATCTCTGTGTGATCCTGGATTTGTATTCACGCAAG
ACAGTGGGTTGGTCGCTTTCCAATCGTAATGATTCTCAGCTGGTATGTGATACGGTATTAAAAGCAGTGTTGTCAAGAAA
CCCTCGGAAAGGATTGATCTTTCATTCGGATCGGGGTTCTAATTTCTGTTCTAAAGAAACACGCAGACTACTAATTGCCA
ACGGTATCAGACGAAGCAACAGCAGAAAAGGAAATTGTTGGGACAATGCGGTGGCAGAGTCTTTCTTTAGTTCTCTAAAA
AGAGAAATCGAATACAATACATTCTATAACATTGAAGAAGCGGAACATCTTCTATTCGATTTTATCGAAGTGTATTACAA
TAGATTCAGGTTTCATTCTACATTAGGTTATATCAGCCCTGAAGAATTTGAGACAAATATTGCTTAA

Upstream 100 bases:

>100_bases
TCCTGAACTTACGAACTTTCTCCAAGAGAAGTGGCTTAAGAGTCGTAAGATTACGGGTTTAAACGTCTCTTTCAGGGAGT
GAAAAAGTCGAATCTTCCCT

Downstream 100 bases:

>100_bases
ATGGCTGTCCACTTTTATGTGACTACTTCAGTACCAAACTTTACACAAAATCAAGATCCCACTTCTAATTTTTTAAGTAT
CTTACGAGCATTTTTTATTT

Product: transposase, IS1501

Products: NA

Alternate protein names: ISO-S3 31 kDa protein [H]

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MERGKVRKAMKHCKISGKQRKQFRPLTTNSKHGGRIAPDLVQRKFHPNEQNRIWVSDVTFIRTSFGWSYLCVILDLYSRK
TVGWSLSNRNDSQLVCDTVLKAVLSRNPRKGLIFHSDRGSNFCSKETRRLLIANGIRRSNSRKGNCWDNAVAESFFSSLK
REIEYNTFYNIEEAEHLLFDFIEVYYNRFRFHSTLGYISPEEFETNIA

Sequences:

>Translated_208_residues
MERGKVRKAMKHCKISGKQRKQFRPLTTNSKHGGRIAPDLVQRKFHPNEQNRIWVSDVTFIRTSFGWSYLCVILDLYSRK
TVGWSLSNRNDSQLVCDTVLKAVLSRNPRKGLIFHSDRGSNFCSKETRRLLIANGIRRSNSRKGNCWDNAVAESFFSSLK
REIEYNTFYNIEEAEHLLFDFIEVYYNRFRFHSTLGYISPEEFETNIA
>Mature_208_residues
MERGKVRKAMKHCKISGKQRKQFRPLTTNSKHGGRIAPDLVQRKFHPNEQNRIWVSDVTFIRTSFGWSYLCVILDLYSRK
TVGWSLSNRNDSQLVCDTVLKAVLSRNPRKGLIFHSDRGSNFCSKETRRLLIANGIRRSNSRKGNCWDNAVAESFFSSLK
REIEYNTFYNIEEAEHLLFDFIEVYYNRFRFHSTLGYISPEEFETNIA

Specific function: Involved in the transposition of the insertion sequence is3 [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=182, Percent_Identity=35.1648351648352, Blast_Score=103, Evalue=9e-23,
Organism=Escherichia coli, GI1788405, Length=200, Percent_Identity=38.5, Blast_Score=152, Evalue=1e-38,
Organism=Escherichia coli, GI1787263, Length=200, Percent_Identity=38.5, Blast_Score=152, Evalue=1e-38,
Organism=Escherichia coli, GI1786753, Length=200, Percent_Identity=38.5, Blast_Score=152, Evalue=1e-38,
Organism=Escherichia coli, GI1786570, Length=200, Percent_Identity=38.5, Blast_Score=152, Evalue=1e-38,
Organism=Escherichia coli, GI1786490, Length=200, Percent_Identity=38.5, Blast_Score=152, Evalue=1e-38,
Organism=Escherichia coli, GI1789981, Length=171, Percent_Identity=36.2573099415205, Blast_Score=110, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 24399; Mature: 24399

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERGKVRKAMKHCKISGKQRKQFRPLTTNSKHGGRIAPDLVQRKFHPNEQNRIWVSDVTF
CCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEHHHH
IRTSFGWSYLCVILDLYSRKTVGWSLSNRNDSQLVCDTVLKAVLSRNPRKGLIFHSDRGS
HHHHCCHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCC
NFCSKETRRLLIANGIRRSNSRKGNCWDNAVAESFFSSLKREIEYNTFYNIEEAEHLLFD
CHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHH
FIEVYYNRFRFHSTLGYISPEEFETNIA
HHHHHHHHHHHHHHHCCCCHHHHCCCCC
>Mature Secondary Structure
MERGKVRKAMKHCKISGKQRKQFRPLTTNSKHGGRIAPDLVQRKFHPNEQNRIWVSDVTF
CCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEHHHH
IRTSFGWSYLCVILDLYSRKTVGWSLSNRNDSQLVCDTVLKAVLSRNPRKGLIFHSDRGS
HHHHCCHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCC
NFCSKETRRLLIANGIRRSNSRKGNCWDNAVAESFFSSLKREIEYNTFYNIEEAEHLLFD
CHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHH
FIEVYYNRFRFHSTLGYISPEEFETNIA
HHHHHHHHHHHHHHHCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2824781 [H]