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The map label for this gene is cph2 [H]

Identifier: 45657009

GI number: 45657009

Start: 1389130

End: 1390092

Strand: Reverse

Name: cph2 [H]

Synonym: LIC11125

Alternate gene names: 45657009

Gene position: 1390092-1389130 (Counterclockwise)

Preceding gene: 45657010

Following gene: 45657003

Centisome position: 32.5

GC content: 38.94

Gene sequence:

>963_bases
ATGGATCTCGAAAACGAATATAATCATGAAAAATTTTTCAACTACTCCTTAGATTTACATGCCATTCAAAAAATGGACGG
CATCATTTTACAAATTAATCAATCTTTTCAGCGTATCATGGGCTGGACCAACGAAGATCTAAAAGGACGCACTCATTTTC
ATTTATTACACCCAGAAGATGTAGAATCCAGCCTAAAAGAATTTGAACAATTAAATGAAGGAGTATCACATCTATCGATT
CAAAATCGATGTCGATGTGCTGATGGAACTTATAAATATTTTTCATGGACCGCCTTTCCGGATCTCGAATCAGATCGGAT
CTACGTGACCGGAAGAGATATTACTGACATCATCGAGTCGAATCAAAAAATCAGTAAACTTGCTTCCGATCTGGAAGAAG
CAAATAATAAATTATTAGAACAAGCATCTACGGATCCTCTTACAAAACTCAAAAACAGAAGATCCTTCAACGAAGAAATA
AATCATCTCATTCGTTTGGGACAACACCAGGAGAAATCGATCTCGCTTATGATGATCGATGTGGATCATTTTAAAGACTA
CAACGACAAATTCGGTCATCCAGCAGGAGATCGTATTTTAATTCGATTGGCCGAAGTTTTTACAGAAACACTTCGGTCAT
GCGACCTTGTGGCGCGTTTCGGAGGAGAAGAATTCGTAGTTGCGTTATCCGACACGAATGAAGAAAAAGCAGTCGAAGTC
GCGGAACGTTTGATGGCCAACGTTAAAAAGAAATCTTGGGAAAATTCTCCGATTACGATCAGCGTTGGCATAACAACCCT
AAATTTCAACGGTCCCGTTCCAATATATCATACCGATCTTTCTACAGGAATCATAGAAGACGCAGATCGCGCACTCTATC
GTTCTAAAGCAAACGGCAGAAATCAAGCAACACACAGTTCACAACTTAAGACAGAAAATCAAACGTCCGTTCGCAAAAAT
TGA

Upstream 100 bases:

>100_bases
TGAATACGATATTATTTTCCGTTTTTTTAAACACCAGTGAACGTAGGATTCCAAAAAGAACAATTCTTTTTACGTTAATT
CAATTCTAGGAAAATTAAGA

Downstream 100 bases:

>100_bases
ATTTCAGTTCTTACAAAACAACGTTTATAGAAACTATTGAATTTTTAAAGGGTTCTAGTTTTATTTTCCTTGAGTGGAAA
TAAATGGTTCTTTAGGAGAT

Product: GGDEF family protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MDLENEYNHEKFFNYSLDLHAIQKMDGIILQINQSFQRIMGWTNEDLKGRTHFHLLHPEDVESSLKEFEQLNEGVSHLSI
QNRCRCADGTYKYFSWTAFPDLESDRIYVTGRDITDIIESNQKISKLASDLEEANNKLLEQASTDPLTKLKNRRSFNEEI
NHLIRLGQHQEKSISLMMIDVDHFKDYNDKFGHPAGDRILIRLAEVFTETLRSCDLVARFGGEEFVVALSDTNEEKAVEV
AERLMANVKKKSWENSPITISVGITTLNFNGPVPIYHTDLSTGIIEDADRALYRSKANGRNQATHSSQLKTENQTSVRKN

Sequences:

>Translated_320_residues
MDLENEYNHEKFFNYSLDLHAIQKMDGIILQINQSFQRIMGWTNEDLKGRTHFHLLHPEDVESSLKEFEQLNEGVSHLSI
QNRCRCADGTYKYFSWTAFPDLESDRIYVTGRDITDIIESNQKISKLASDLEEANNKLLEQASTDPLTKLKNRRSFNEEI
NHLIRLGQHQEKSISLMMIDVDHFKDYNDKFGHPAGDRILIRLAEVFTETLRSCDLVARFGGEEFVVALSDTNEEKAVEV
AERLMANVKKKSWENSPITISVGITTLNFNGPVPIYHTDLSTGIIEDADRALYRSKANGRNQATHSSQLKTENQTSVRKN
>Mature_320_residues
MDLENEYNHEKFFNYSLDLHAIQKMDGIILQINQSFQRIMGWTNEDLKGRTHFHLLHPEDVESSLKEFEQLNEGVSHLSI
QNRCRCADGTYKYFSWTAFPDLESDRIYVTGRDITDIIESNQKISKLASDLEEANNKLLEQASTDPLTKLKNRRSFNEEI
NHLIRLGQHQEKSISLMMIDVDHFKDYNDKFGHPAGDRILIRLAEVFTETLRSCDLVARFGGEEFVVALSDTNEEKAVEV
AERLMANVKKKSWENSPITISVGITTLNFNGPVPIYHTDLSTGIIEDADRALYRSKANGRNQATHSSQLKTENQTSVRKN

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=190, Percent_Identity=36.8421052631579, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=36.2573099415205, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI87082007, Length=198, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788381, Length=289, Percent_Identity=29.757785467128, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI87081881, Length=285, Percent_Identity=30.1754385964912, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=32.0224719101124, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=31.1377245508982, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI87081977, Length=176, Percent_Identity=32.9545454545455, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787802, Length=215, Percent_Identity=28.3720930232558, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788085, Length=227, Percent_Identity=28.1938325991189, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1787541, Length=173, Percent_Identity=29.4797687861272, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788956, Length=109, Percent_Identity=38.5321100917431, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787056, Length=178, Percent_Identity=28.6516853932584, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081974, Length=101, Percent_Identity=30.6930693069307, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 36725; Mature: 36725

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS50112 PAS ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLENEYNHEKFFNYSLDLHAIQKMDGIILQINQSFQRIMGWTNEDLKGRTHFHLLHPED
CCCCCCCCCHHHEEECCHHHHHHHHCCEEEEECHHHHHHHCCCCCCCCCCEEEEEECCHH
VESSLKEFEQLNEGVSHLSIQNRCRCADGTYKYFSWTAFPDLESDRIYVTGRDITDIIES
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCHHHHHHC
NQKISKLASDLEEANNKLLEQASTDPLTKLKNRRSFNEEINHLIRLGQHQEKSISLMMID
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEEEEE
VDHFKDYNDKFGHPAGDRILIRLAEVFTETLRSCDLVARFGGEEFVVALSDTNEEKAVEV
HHHCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH
AERLMANVKKKSWENSPITISVGITTLNFNGPVPIYHTDLSTGIIEDADRALYRSKANGR
HHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHCCCCC
NQATHSSQLKTENQTSVRKN
CCCCCHHHHCCCCCHHCCCC
>Mature Secondary Structure
MDLENEYNHEKFFNYSLDLHAIQKMDGIILQINQSFQRIMGWTNEDLKGRTHFHLLHPED
CCCCCCCCCHHHEEECCHHHHHHHHCCEEEEECHHHHHHHCCCCCCCCCCEEEEEECCHH
VESSLKEFEQLNEGVSHLSIQNRCRCADGTYKYFSWTAFPDLESDRIYVTGRDITDIIES
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCHHHHHHC
NQKISKLASDLEEANNKLLEQASTDPLTKLKNRRSFNEEINHLIRLGQHQEKSISLMMID
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEEEEE
VDHFKDYNDKFGHPAGDRILIRLAEVFTETLRSCDLVARFGGEEFVVALSDTNEEKAVEV
HHHCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH
AERLMANVKKKSWENSPITISVGITTLNFNGPVPIYHTDLSTGIIEDADRALYRSKANGR
HHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHCCCCC
NQATHSSQLKTENQTSVRKN
CCCCCHHHHCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]