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The map label for this gene is rsbV [H]

Identifier: 45656891

GI number: 45656891

Start: 1222645

End: 1222980

Strand: Reverse

Name: rsbV [H]

Synonym: LIC11004

Alternate gene names: 45656891

Gene position: 1222980-1222645 (Counterclockwise)

Preceding gene: 45656892

Following gene: 45656890

Centisome position: 28.59

GC content: 34.23

Gene sequence:

>336_bases
ATGGAAATAACCAGAAGAGAAAGCGGGAACATTGTCATTCTGGACATAAACGGAGAAATCGATCTCTACAATGCTCCAGA
AATTAAAGATGTAATCGCGAAACTCATCGAGGAGCAAAAATATTATACGATCATCAATCTCGAAAAAGTTTCTTATATAG
ATTCTTCTGGTATTGGTGCTCTCATTTCCAGCCTTTCTAATCTGAAAAAATATCAGGGTGGACTTAAAATTATCAATGTT
TCCGGATCTGTAAGAAAGGTATTTGAGCTAACAAAGCTAACTTCTTTTTTTGAGATTTTTGATAATGAGTCAGAAGCAGT
TTCTGCTTTTAAGTAA

Upstream 100 bases:

>100_bases
TTGTACGAAAAGCCCGAATTTTCCGGTTGACTATTTAAAGAATCGACTTTCCTTTAGTAGAGCTGGCTGGAAAGAAATAG
AAAGGAGTTGCTGATTATTT

Downstream 100 bases:

>100_bases
ATCGGAATTTTAATTTTATCCTACCTTTTCTAAAATCTGGTGCCACAATGAAATCGACTCAAAGAAAAATACTTTCTTCT
TTTATAATCTTACTCGCAGG

Product: anti-sigma factor antagonist

Products: NA

Alternate protein names: Anti-anti-sigma-B factor [H]

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MEITRRESGNIVILDINGEIDLYNAPEIKDVIAKLIEEQKYYTIINLEKVSYIDSSGIGALISSLSNLKKYQGGLKIINV
SGSVRKVFELTKLTSFFEIFDNESEAVSAFK

Sequences:

>Translated_111_residues
MEITRRESGNIVILDINGEIDLYNAPEIKDVIAKLIEEQKYYTIINLEKVSYIDSSGIGALISSLSNLKKYQGGLKIINV
SGSVRKVFELTKLTSFFEIFDNESEAVSAFK
>Mature_111_residues
MEITRRESGNIVILDINGEIDLYNAPEIKDVIAKLIEEQKYYTIINLEKVSYIDSSGIGALISSLSNLKKYQGGLKIINV
SGSVRKVFELTKLTSFFEIFDNESEAVSAFK

Specific function: Positive regulator of sigma-B activity. Non- phosphorylated rsbV binds to rsbW, preventing its association with sigma-B. When phosphorylated, releases rsbW, which is then free to complex with and inactivate sigma-B [H]

COG id: COG1366

COG function: function code T; Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 STAS domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003658
- InterPro:   IPR002645 [H]

Pfam domain/function: PF01740 STAS [H]

EC number: NA

Molecular weight: Translated: 12439; Mature: 12439

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS50801 STAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEITRRESGNIVILDINGEIDLYNAPEIKDVIAKLIEEQKYYTIINLEKVSYIDSSGIGA
CCCCCCCCCCEEEEEECCCEEECCCCCHHHHHHHHHHCCCEEEEEEEHHHEEECCCCHHH
LISSLSNLKKYQGGLKIINVSGSVRKVFELTKLTSFFEIFDNESEAVSAFK
HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCC
>Mature Secondary Structure
MEITRRESGNIVILDINGEIDLYNAPEIKDVIAKLIEEQKYYTIINLEKVSYIDSSGIGA
CCCCCCCCCCEEEEEECCCEEECCCCCHHHHHHHHHHCCCEEEEEEEHHHEEECCCCHHH
LISSLSNLKKYQGGLKIINVSGSVRKVFELTKLTSFFEIFDNESEAVSAFK
HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]