Click here to switch to the map view.

The map label for this gene is 45656866

Identifier: 45656866

GI number: 45656866

Start: 1184095

End: 1184883

Strand: Reverse

Name: 45656866

Synonym: LIC10978

Alternate gene names: NA

Gene position: 1184883-1184095 (Counterclockwise)

Preceding gene: 45656867

Following gene: 45656865

Centisome position: 27.7

GC content: 34.98

Gene sequence:

>789_bases
GTGACAAAATACACGTTTACCGCTACTGAACTTCCATCTGCCTATCCTATAATGCAACACGCGGAAATGAGTTTTTTAGA
TTCCCCACCTAAAAAACTTTTTTTCTATTGCGGAAAAGCTCCAGGAAAGTTTGGAGAAACACCTATTACCGATCTTAGAA
AAGTACTAAAAGAAATTCCAACTCATATACGCGAAAAATTCGAAAAAGAAAAAATTCGATATTCTAGAGTTTATAACGGA
CCTTCTAACCAATCCCGTTTTCAATTTTGGAAAACCAAACGTTGGGACGAAATGTTCCAAACAAAAGATAAAAACGAAGT
TGAAAAAACTTCTAAAAAACAGAATTTTAAAGTAGAATGGTTTGGTAAAGATGATCTAAGACTTGTAAATACTACATTAG
CAATTCGTAAACATCCCGAATCTAACACATTAGCATGGCATAATCATTCTCAAGTGTTTCATATAGACGCGGCTCGTAAG
GAATACTGGAAAATATTTGTACGTCAAAAAACAATCCGAGGATTTTTAGTAGCGGTTACTCTCGAAATTCTTACATTTAT
CAAAAAAATAACCACCAAAAAAGAATACTTAGACACACATTGTACTTACGGAGGTGGTCAAGAAATTTCAGGTACCGAAT
TAAAACAAATTCAAAATGTATTTTGGAACAACATCTCACTATTTTCCTGGCAGAACGGAGACATATTAGTGATAGACAAC
TATTCCGTATCTCACGGAAGACATCCGTTTACCGGACCAAGGGAAATTTTTGTAGCCTGGGCGGATTAA

Upstream 100 bases:

>100_bases
AGGATTCGAAATAATTTCTCCTCAAGATTTTGAAGAAGTAATTCTAAACATAGACTCTAATCTAAAGAATAATTATCTCG
GAACGTCTCCTCGCAATCAG

Downstream 100 bases:

>100_bases
AACCATGCAAGAATTGGATTCTGTTCGGATTCATTTTAATGAAAGTAATTTAGCTTTTTTGAATTTACTTTTAGGGTTGA
TTATGTACGGAATCGCCTTA

Product: syringomycin channel-forming protein

Products: NA

Alternate protein names: SyrP Protein; SyrP-Like Protein; Non-Ribosomal Peptide Synthetase; Regulatory Protein; Amino Acid Adenylation Domain Protein; Amino Acid Adenylation Domain-Containing Protein; Pyoverdine Biosynthesis Regulatory Gene; Condensation Domain-Containing Protein; Taurine Catabolism Dioxygenase TauD TfdA Family; Taurine Catabolism Dioxygenase Taud/Tfda; SyrP-Like Regulatory Protein; Peptide Synthase; Syringomycin Biosynthesis; Oxidoreductase; Taurine Catabolism Dioxygenase TauD/TfdA Family; Clavaminic Acid Synthetase-Like Protein; Pyoverdine Biosynthesis Regulatory Gene SyrP-Like; Non Ribosomal Peptide Synthase Antibiotic Synthesis; Multi-Domain Non-Ribosomal Peptide Synthetase; Syrp Like Protein Albicidin Biosynthesis Regulation; Regulatory Protein SyrP-Like; Syringomycin Biosynthesis ; Pyoverdine Biosynthesis Regulatory Protein SyrP-Like; Syringomycin Synthesis Regulator SyrP

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MTKYTFTATELPSAYPIMQHAEMSFLDSPPKKLFFYCGKAPGKFGETPITDLRKVLKEIPTHIREKFEKEKIRYSRVYNG
PSNQSRFQFWKTKRWDEMFQTKDKNEVEKTSKKQNFKVEWFGKDDLRLVNTTLAIRKHPESNTLAWHNHSQVFHIDAARK
EYWKIFVRQKTIRGFLVAVTLEILTFIKKITTKKEYLDTHCTYGGGQEISGTELKQIQNVFWNNISLFSWQNGDILVIDN
YSVSHGRHPFTGPREIFVAWAD

Sequences:

>Translated_262_residues
MTKYTFTATELPSAYPIMQHAEMSFLDSPPKKLFFYCGKAPGKFGETPITDLRKVLKEIPTHIREKFEKEKIRYSRVYNG
PSNQSRFQFWKTKRWDEMFQTKDKNEVEKTSKKQNFKVEWFGKDDLRLVNTTLAIRKHPESNTLAWHNHSQVFHIDAARK
EYWKIFVRQKTIRGFLVAVTLEILTFIKKITTKKEYLDTHCTYGGGQEISGTELKQIQNVFWNNISLFSWQNGDILVIDN
YSVSHGRHPFTGPREIFVAWAD
>Mature_261_residues
TKYTFTATELPSAYPIMQHAEMSFLDSPPKKLFFYCGKAPGKFGETPITDLRKVLKEIPTHIREKFEKEKIRYSRVYNGP
SNQSRFQFWKTKRWDEMFQTKDKNEVEKTSKKQNFKVEWFGKDDLRLVNTTLAIRKHPESNTLAWHNHSQVFHIDAARKE
YWKIFVRQKTIRGFLVAVTLEILTFIKKITTKKEYLDTHCTYGGGQEISGTELKQIQNVFWNNISLFSWQNGDILVIDNY
SVSHGRHPFTGPREIFVAWAD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30898; Mature: 30766

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKYTFTATELPSAYPIMQHAEMSFLDSPPKKLFFYCGKAPGKFGETPITDLRKVLKEIP
CCEEEEEHHCCCCCCCHHHHHHHHHHCCCCHHEEEEECCCCCCCCCCCHHHHHHHHHHHH
THIREKFEKEKIRYSRVYNGPSNQSRFQFWKTKRWDEMFQTKDKNEVEKTSKKQNFKVEW
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEE
FGKDDLRLVNTTLAIRKHPESNTLAWHNHSQVFHIDAARKEYWKIFVRQKTIRGFLVAVT
ECCCCCEEEEEEEEEEECCCCCCEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
LEILTFIKKITTKKEYLDTHCTYGGGQEISGTELKQIQNVFWNNISLFSWQNGDILVIDN
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCEEEEEC
YSVSHGRHPFTGPREIFVAWAD
CCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure 
TKYTFTATELPSAYPIMQHAEMSFLDSPPKKLFFYCGKAPGKFGETPITDLRKVLKEIP
CEEEEEHHCCCCCCCHHHHHHHHHHCCCCHHEEEEECCCCCCCCCCCHHHHHHHHHHHH
THIREKFEKEKIRYSRVYNGPSNQSRFQFWKTKRWDEMFQTKDKNEVEKTSKKQNFKVEW
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEE
FGKDDLRLVNTTLAIRKHPESNTLAWHNHSQVFHIDAARKEYWKIFVRQKTIRGFLVAVT
ECCCCCEEEEEEEEEEECCCCCCEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
LEILTFIKKITTKKEYLDTHCTYGGGQEISGTELKQIQNVFWNNISLFSWQNGDILVIDN
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCEEEEEC
YSVSHGRHPFTGPREIFVAWAD
CCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA