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The map label for this gene is lpsD [H]

Identifier: 45656485

GI number: 45656485

Start: 714312

End: 715418

Strand: Reverse

Name: lpsD [H]

Synonym: LIC10587

Alternate gene names: 45656485

Gene position: 715418-714312 (Counterclockwise)

Preceding gene: 45656488

Following gene: 45656484

Centisome position: 16.73

GC content: 37.85

Gene sequence:

>1107_bases
GTGATTTTACATATAGATACGGAAACTGGTTGGAGAGGCGGAGAAAGACAACTCTTACTCTTAGCAGAAGGTCTCAAAAA
AAGAAAAATTCCACAACTCATTTTAGGCCGACCCGGCTCCGCTCTAGAAAATAGATGTTCCGACCAAGGACTTCCCTTTC
AAGCCGTGGACATGAGAGGAGAATGGGATCTTACATCCATCCAAACAATCCGTGCCATCGTTCTAGAAAAAAAGATTAAA
CTTATACATACTCATACGGCAAAGGCACATACACTTGCCTTGCTCGCAAAATCAAAACTTCCAAATACAAAACTCATAGT
TTCCAGACGAGTGGATTTTAGTATTAGAAAAAACTTATTTTCGATTTGGAAATATAAATCCAAACGGAACGATCTTTTTC
TAACCGTATCCGATAAGATCCGAGAAATTCTACTCAGAGATGGAGTTGATCCTGCAAAAACCGTAACCGTTCATAGTGGA
ATCGATTTCGCCTTCGCCAAAAAACTTCCGAACTCCACTCTCTATAAAAAAGAATTTTCCCTAAAAAAAGATACGATCGT
AATCGGAAACGTTGCAGCCCTAGTAGACCACAAAGATCAAAAAACTCTTTTAAAAGCAGTTTCTAAAATTGATCCGTCTA
AAAACTTTAAAGTTTTTATTGTAGGCGAAGGAGAACTCAGAAAAGAACTGGAAGACTTCGCAAATACATTAGAAATTTCT
GATAAATTAATTTTTACCGGCTATAGAACTGACGTTCCAGATATTCTTTCTTTATTTGACATTTTTACACTCACTTCCAA
AGAAGAAGGACTAGGAACCTCCATTTTAGATGCGATGGCGGTGGGACTTCCAATCGTAGCGACCAAAGGTGGCGGAATCG
GAGAAATGCTCACCCACGAAAAAGGGGCATTCCTTGCGGAAGTAGGAGATTCTGAATCTCTAGCAAAATATTATGAAATT
CTTATTGATGATTTAAAACTCCGCAGAACGTTTGGAAATTTTAACAAAGAATCCGTCAAAAGATTCTCCATAAAAAACAC
AATCCGCAAAACGGAACTTGCTTATTACTCCTTTTTAGGAGAAGATCTTTTTGGAGAAAAAGTATGA

Upstream 100 bases:

>100_bases
GTTTAATATATTAGAATAATATTCACAAAAACAGAAGATTCTGTCCAGTGATTTTTCAAGGATTCCTTGCAGAAATGACA
GCTAACTGGAAACTGAACCG

Downstream 100 bases:

>100_bases
AACGCCTCCTTATCATAGACGGACACGCATTTGTATTCCGCGCCTACTACGCCTTTGGCGCTTCCAATCTAACCAATTCC
AAAACTGGAAAACCGAGCGG

Product: glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MILHIDTETGWRGGERQLLLLAEGLKKRKIPQLILGRPGSALENRCSDQGLPFQAVDMRGEWDLTSIQTIRAIVLEKKIK
LIHTHTAKAHTLALLAKSKLPNTKLIVSRRVDFSIRKNLFSIWKYKSKRNDLFLTVSDKIREILLRDGVDPAKTVTVHSG
IDFAFAKKLPNSTLYKKEFSLKKDTIVIGNVAALVDHKDQKTLLKAVSKIDPSKNFKVFIVGEGELRKELEDFANTLEIS
DKLIFTGYRTDVPDILSLFDIFTLTSKEEGLGTSILDAMAVGLPIVATKGGGIGEMLTHEKGAFLAEVGDSESLAKYYEI
LIDDLKLRRTFGNFNKESVKRFSIKNTIRKTELAYYSFLGEDLFGEKV

Sequences:

>Translated_368_residues
MILHIDTETGWRGGERQLLLLAEGLKKRKIPQLILGRPGSALENRCSDQGLPFQAVDMRGEWDLTSIQTIRAIVLEKKIK
LIHTHTAKAHTLALLAKSKLPNTKLIVSRRVDFSIRKNLFSIWKYKSKRNDLFLTVSDKIREILLRDGVDPAKTVTVHSG
IDFAFAKKLPNSTLYKKEFSLKKDTIVIGNVAALVDHKDQKTLLKAVSKIDPSKNFKVFIVGEGELRKELEDFANTLEIS
DKLIFTGYRTDVPDILSLFDIFTLTSKEEGLGTSILDAMAVGLPIVATKGGGIGEMLTHEKGAFLAEVGDSESLAKYYEI
LIDDLKLRRTFGNFNKESVKRFSIKNTIRKTELAYYSFLGEDLFGEKV
>Mature_368_residues
MILHIDTETGWRGGERQLLLLAEGLKKRKIPQLILGRPGSALENRCSDQGLPFQAVDMRGEWDLTSIQTIRAIVLEKKIK
LIHTHTAKAHTLALLAKSKLPNTKLIVSRRVDFSIRKNLFSIWKYKSKRNDLFLTVSDKIREILLRDGVDPAKTVTVHSG
IDFAFAKKLPNSTLYKKEFSLKKDTIVIGNVAALVDHKDQKTLLKAVSKIDPSKNFKVFIVGEGELRKELEDFANTLEIS
DKLIFTGYRTDVPDILSLFDIFTLTSKEEGLGTSILDAMAVGLPIVATKGGGIGEMLTHEKGAFLAEVGDSESLAKYYEI
LIDDLKLRRTFGNFNKESVKRFSIKNTIRKTELAYYSFLGEDLFGEKV

Specific function: Slime polysaccharide colanic acid biosynthesis. [C]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 41344; Mature: 41344

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILHIDTETGWRGGERQLLLLAEGLKKRKIPQLILGRPGSALENRCSDQGLPFQAVDMRG
CEEEEECCCCCCCCCCEEEEEHHCHHHCCCCHHHHCCCCHHHHHHCCCCCCCEEEECCCC
EWDLTSIQTIRAIVLEKKIKLIHTHTAKAHTLALLAKSKLPNTKLIVSRRVDFSIRKNLF
CCCHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHH
SIWKYKSKRNDLFLTVSDKIREILLRDGVDPAKTVTVHSGIDFAFAKKLPNSTLYKKEFS
HHHHHCCCCCCEEEEEHHHHHHHHHHCCCCCHHEEEEECCCCHHHHHHCCCCCEEHHHCC
LKKDTIVIGNVAALVDHKDQKTLLKAVSKIDPSKNFKVFIVGEGELRKELEDFANTLEIS
CCCCEEEEECCEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHCC
DKLIFTGYRTDVPDILSLFDIFTLTSKEEGLGTSILDAMAVGLPIVATKGGGIGEMLTHE
CEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHCC
KGAFLAEVGDSESLAKYYEILIDDLKLRRTFGNFNKESVKRFSIKNTIRKTELAYYSFLG
CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EDLFGEKV
HHHCCCCC
>Mature Secondary Structure
MILHIDTETGWRGGERQLLLLAEGLKKRKIPQLILGRPGSALENRCSDQGLPFQAVDMRG
CEEEEECCCCCCCCCCEEEEEHHCHHHCCCCHHHHCCCCHHHHHHCCCCCCCEEEECCCC
EWDLTSIQTIRAIVLEKKIKLIHTHTAKAHTLALLAKSKLPNTKLIVSRRVDFSIRKNLF
CCCHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHH
SIWKYKSKRNDLFLTVSDKIREILLRDGVDPAKTVTVHSGIDFAFAKKLPNSTLYKKEFS
HHHHHCCCCCCEEEEEHHHHHHHHHHCCCCCHHEEEEECCCCHHHHHHCCCCCEEHHHCC
LKKDTIVIGNVAALVDHKDQKTLLKAVSKIDPSKNFKVFIVGEGELRKELEDFANTLEIS
CCCCEEEEECCEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHCC
DKLIFTGYRTDVPDILSLFDIFTLTSKEEGLGTSILDAMAVGLPIVATKGGGIGEMLTHE
CEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHCC
KGAFLAEVGDSESLAKYYEILIDDLKLRRTFGNFNKESVKRFSIKNTIRKTELAYYSFLG
CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EDLFGEKV
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]