Click here to switch to the map view.

The map label for this gene is 45656383

Identifier: 45656383

GI number: 45656383

Start: 562549

End: 563274

Strand: Direct

Name: 45656383

Synonym: LIC10485

Alternate gene names: NA

Gene position: 562549-563274 (Clockwise)

Preceding gene: 45656382

Following gene: 45656384

Centisome position: 13.15

GC content: 35.54

Gene sequence:

>726_bases
ATGGAGGATTTTGACGACCTACCAGCTCACTTTCAGATAGAAGTCGATTCTGCGATTTTAAAAGAGATTCCTATTTCATT
GATCACTTACGTTTTAACACCGAAAGGTGAAAAAAAACTGAGGTATATCATTCACGGGATTCTCGCACGATACGGTCGTC
TTGATCTTTCCGAGCTTCTTTTTACTTCTGCCAAAGAACTGATCGTCAATGCGACAAAAGCATCGATTAAACGAATCTTA
TTCAAAGAATCCAAATTGAATATAGAGTCTCCTGAAGATTACGCTCGAGGGATGGAGACGTTTCATAGTAGTTTGAGCAA
TAAAAAGTTCCCATTTTATAGAGAAAAAATGAAGGAACACGATCTTTTAGTAAAAGTTACTTTCTGTTTTAATCAAGATA
GAATCGTTTTAAAGATTCTAAATAATTTTCAACTTACGGAACAGGAAGAGAAAAGAGTTAGAGAAAAGTTCCGAATTTCC
AGAGGTTTTGACAATCTTTTTGAGTTTTATATGAAGTTTGGTGATTCAACAGAAGGCGCTGGGCTCGGAATTACGATGGT
AGAAATTCTGGTTGCACAGAGTGGATTTGACAGACATTTGTTTACGATTTACAGTAAGAAAGGGGTTTCTCAAACTGTTG
CGAGAGTTGAAATTCCTCTAAAAGAGGATTATATTCCTAAAAGATTAAAGTTCGCAAAAGAGCAAAATTTAACTTCTGAA
ATGTAG

Upstream 100 bases:

>100_bases
GTTTGGTTGAAATTTTAGGAGTTTTCATTTTTTGAAGACTTTTTTTAAAATTCTTTTTTTTTCGTCGAAAATAGGAAGCA
TTTCGTCGAATCTCTAATTC

Downstream 100 bases:

>100_bases
AACGAGGATGAATGGAACCGAGTAATCAAGTCAATAAATTACAGGAACAAGCGAATCTTATGAATCTTGCGCTTGAATCT
GTACTTACGGAAGAACAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MEDFDDLPAHFQIEVDSAILKEIPISLITYVLTPKGEKKLRYIIHGILARYGRLDLSELLFTSAKELIVNATKASIKRIL
FKESKLNIESPEDYARGMETFHSSLSNKKFPFYREKMKEHDLLVKVTFCFNQDRIVLKILNNFQLTEQEEKRVREKFRIS
RGFDNLFEFYMKFGDSTEGAGLGITMVEILVAQSGFDRHLFTIYSKKGVSQTVARVEIPLKEDYIPKRLKFAKEQNLTSE
M

Sequences:

>Translated_241_residues
MEDFDDLPAHFQIEVDSAILKEIPISLITYVLTPKGEKKLRYIIHGILARYGRLDLSELLFTSAKELIVNATKASIKRIL
FKESKLNIESPEDYARGMETFHSSLSNKKFPFYREKMKEHDLLVKVTFCFNQDRIVLKILNNFQLTEQEEKRVREKFRIS
RGFDNLFEFYMKFGDSTEGAGLGITMVEILVAQSGFDRHLFTIYSKKGVSQTVARVEIPLKEDYIPKRLKFAKEQNLTSE
M
>Mature_241_residues
MEDFDDLPAHFQIEVDSAILKEIPISLITYVLTPKGEKKLRYIIHGILARYGRLDLSELLFTSAKELIVNATKASIKRIL
FKESKLNIESPEDYARGMETFHSSLSNKKFPFYREKMKEHDLLVKVTFCFNQDRIVLKILNNFQLTEQEEKRVREKFRIS
RGFDNLFEFYMKFGDSTEGAGLGITMVEILVAQSGFDRHLFTIYSKKGVSQTVARVEIPLKEDYIPKRLKFAKEQNLTSE
M

Specific function: Unknown

COG id: COG1639

COG function: function code T; Predicted signal transduction protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR013976 [H]

Pfam domain/function: PF02518 HATPase_c; PF08668 HDOD [H]

EC number: NA

Molecular weight: Translated: 28063; Mature: 28063

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDFDDLPAHFQIEVDSAILKEIPISLITYVLTPKGEKKLRYIIHGILARYGRLDLSELL
CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHH
FTSAKELIVNATKASIKRILFKESKLNIESPEDYARGMETFHSSLSNKKFPFYREKMKEH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC
DLLVKVTFCFNQDRIVLKILNNFQLTEQEEKRVREKFRISRGFDNLFEFYMKFGDSTEGA
CEEEEEEEEECCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
GLGITMVEILVAQSGFDRHLFTIYSKKGVSQTVARVEIPLKEDYIPKRLKFAKEQNLTSE
CCHHHHHHHHHHCCCCCCHHHEEHHHCCHHHHHHHEECCCCCCCCHHHHHHHHHCCCCCC
M
C
>Mature Secondary Structure
MEDFDDLPAHFQIEVDSAILKEIPISLITYVLTPKGEKKLRYIIHGILARYGRLDLSELL
CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHH
FTSAKELIVNATKASIKRILFKESKLNIESPEDYARGMETFHSSLSNKKFPFYREKMKEH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC
DLLVKVTFCFNQDRIVLKILNNFQLTEQEEKRVREKFRISRGFDNLFEFYMKFGDSTEGA
CEEEEEEEEECCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
GLGITMVEILVAQSGFDRHLFTIYSKKGVSQTVARVEIPLKEDYIPKRLKFAKEQNLTSE
CCHHHHHHHHHHCCCCCCHHHEEHHHCCHHHHHHHEECCCCCCCCHHHHHHHHHCCCCCC
M
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]