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The map label for this gene is nusB

Identifier: 45656304

GI number: 45656304

Start: 460402

End: 460782

Strand: Direct

Name: nusB

Synonym: LIC10404

Alternate gene names: 45656304

Gene position: 460402-460782 (Clockwise)

Preceding gene: 45656303

Following gene: 45656305

Centisome position: 10.76

GC content: 37.01

Gene sequence:

>381_bases
ATGGCGCTTTACCAATTGGAACTTACTCAACCCCCTTTAAAGGAAGTTCTTAAGTTTAAATGGTACGATAAAAAAACGGA
ACCAGAAGAAAGGGATTTTGCAGTTTCCATCGTAAATGGGGTTGTGAAAAACCAAGAACAGATCGATACTCTAATCAAGA
AATACTCCAAAAATTGGGACTTTTCAAGAATCAGTATCGTAAACAAAGCAATTCTGCGTTTGTCTATATACGCGTTATTA
TATACTTGGGAAGTTCCAAAAAACGTTACGATCGACGAAGCGGTAGAACTTACAAAAGAATTTGAAAGCGAAGAATCGGC
TCGGTTTGTAAACGGAGTTTTGGACGCAATTCTCAAAAACGAAATCAAATCCGATGGATAA

Upstream 100 bases:

>100_bases
AAATAAGGGTGCGGAAGCCGCAGCCACCGCCGTGGAAATGGTAAACCTACTTTCCCTTCTTTGAATGTCAGCTAGACGTA
CTTCCAGAGAAATTGCCGTA

Downstream 100 bases:

>100_bases
AGAAATCCGAAAAAACAGGTTGTTTTTAGAGGGAATCGAGGAAGAGGAATTTTATTTCCCCGAGAATAAAGAACCGGTTC
GGATTCGTAGATCCTATAAT

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MALYQLELTQPPLKEVLKFKWYDKKTEPEERDFAVSIVNGVVKNQEQIDTLIKKYSKNWDFSRISIVNKAILRLSIYALL
YTWEVPKNVTIDEAVELTKEFESEESARFVNGVLDAILKNEIKSDG

Sequences:

>Translated_126_residues
MALYQLELTQPPLKEVLKFKWYDKKTEPEERDFAVSIVNGVVKNQEQIDTLIKKYSKNWDFSRISIVNKAILRLSIYALL
YTWEVPKNVTIDEAVELTKEFESEESARFVNGVLDAILKNEIKSDG
>Mature_125_residues
ALYQLELTQPPLKEVLKFKWYDKKTEPEERDFAVSIVNGVVKNQEQIDTLIKKYSKNWDFSRISIVNKAILRLSIYALLY
TWEVPKNVTIDEAVELTKEFESEESARFVNGVLDAILKNEIKSDG

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=118, Percent_Identity=36.4406779661017, Blast_Score=64, Evalue=3e-12,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 14657; Mature: 14526

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALYQLELTQPPLKEVLKFKWYDKKTEPEERDFAVSIVNGVVKNQEQIDTLIKKYSKNWD
CCEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
FSRISIVNKAILRLSIYALLYTWEVPKNVTIDEAVELTKEFESEESARFVNGVLDAILKN
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
EIKSDG
HHCCCC
>Mature Secondary Structure 
ALYQLELTQPPLKEVLKFKWYDKKTEPEERDFAVSIVNGVVKNQEQIDTLIKKYSKNWD
CEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
FSRISIVNKAILRLSIYALLYTWEVPKNVTIDEAVELTKEFESEESARFVNGVLDAILKN
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
EIKSDG
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA