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The map label for this gene is mcrD [H]

Identifier: 45359119

GI number: 45359119

Start: 1511040

End: 1511519

Strand: Direct

Name: mcrD [H]

Synonym: MMP1556

Alternate gene names: 45359119

Gene position: 1511040-1511519 (Clockwise)

Preceding gene: 45359118

Following gene: 45359120

Centisome position: 90.96

GC content: 37.29

Gene sequence:

>480_bases
ATGATTGAATTAGAAGTCTTCCCACATAGGTATTTAAAAGCAGAAACTACCGAAAAATTCCTGAACCGCGCTTATTCATT
GAGTAAAGTTCAAAGAGTAGTCATACATGGAGAATCTCTTCCTAATAAAGTTGGATACGGTCCAGCTAAAGGAACTCCTG
TAAATCACTCAGAAAAAAAGGAAATTACTGTTAAGGGAGTCCCTGTAGAACTCATGCTTCAAGTTGGAAGGTTATGGGTT
TTACTGGATGATGAAAGCGAAATTGAAAAAATCGAAGAAATCTGTAAGGATCTTTTCCCATTTGGATACCGGTTAACAAA
GGGTAAATTCTTAAGGAACGACCCTACAGTATCGGATTTCATAAAATACGGGGAATCTGCTGTTGATGATATCGACAAAA
GATTATTAGGTGCGACTGACCCCAGAAGTAAGTTTGATTCTTCTGTCACAATTATCCCAAAGAGCGAAAAAAACGAGTAA

Upstream 100 bases:

>100_bases
TTGGTTCAGTATACTCAGCATTTGATGAATTCAGAGAACCAATGAAATACGTAATTGAAGGAGCTTTAAGCATTAAAGAC
CAGTTTTAAGGTAATAAACG

Downstream 100 bases:

>100_bases
GTGATTTTATGCCAGTAGGTAGAAAAGAGCAGATCGTTGATTGTAGAGCTGTTATGGGTCTTGGTGAAGGAGGCGGACTT
GCACAAAGAGGAACATTTGC

Product: methyl-coenzyme M reductase I, protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MIELEVFPHRYLKAETTEKFLNRAYSLSKVQRVVIHGESLPNKVGYGPAKGTPVNHSEKKEITVKGVPVELMLQVGRLWV
LLDDESEIEKIEEICKDLFPFGYRLTKGKFLRNDPTVSDFIKYGESAVDDIDKRLLGATDPRSKFDSSVTIIPKSEKNE

Sequences:

>Translated_159_residues
MIELEVFPHRYLKAETTEKFLNRAYSLSKVQRVVIHGESLPNKVGYGPAKGTPVNHSEKKEITVKGVPVELMLQVGRLWV
LLDDESEIEKIEEICKDLFPFGYRLTKGKFLRNDPTVSDFIKYGESAVDDIDKRLLGATDPRSKFDSSVTIIPKSEKNE
>Mature_159_residues
MIELEVFPHRYLKAETTEKFLNRAYSLSKVQRVVIHGESLPNKVGYGPAKGTPVNHSEKKEITVKGVPVELMLQVGRLWV
LLDDESEIEKIEEICKDLFPFGYRLTKGKFLRNDPTVSDFIKYGESAVDDIDKRLLGATDPRSKFDSSVTIIPKSEKNE

Specific function: Unknown

COG id: COG4055

COG function: function code H; Methyl coenzyme M reductase, subunit D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003901
- ProDom:   PD005228 [H]

Pfam domain/function: PF02505 MCR_D [H]

EC number: NA

Molecular weight: Translated: 18083; Mature: 18083

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIELEVFPHRYLKAETTEKFLNRAYSLSKVQRVVIHGESLPNKVGYGPAKGTPVNHSEKK
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
EITVKGVPVELMLQVGRLWVLLDDESEIEKIEEICKDLFPFGYRLTKGKFLRNDPTVSDF
EEEECCCCHHHHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHH
IKYGESAVDDIDKRLLGATDPRSKFDSSVTIIPKSEKNE
HHHCCHHHHHHHHHHCCCCCCHHHCCCCEEEECCCCCCC
>Mature Secondary Structure
MIELEVFPHRYLKAETTEKFLNRAYSLSKVQRVVIHGESLPNKVGYGPAKGTPVNHSEKK
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
EITVKGVPVELMLQVGRLWVLLDDESEIEKIEEICKDLFPFGYRLTKGKFLRNDPTVSDF
EEEECCCCHHHHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHH
IKYGESAVDDIDKRLLGATDPRSKFDSSVTIIPKSEKNE
HHHCCHHHHHHHHHHCCCCCCHHHCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA