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The map label for this gene is csgD [C]

Identifier: 42523311

GI number: 42523311

Start: 1751629

End: 1752018

Strand: Direct

Name: csgD [C]

Synonym: Bd1826

Alternate gene names: 42523311

Gene position: 1751629-1752018 (Clockwise)

Preceding gene: 42523307

Following gene: 42523312

Centisome position: 46.3

GC content: 46.15

Gene sequence:

>390_bases
ATGCTCAGAGATGTCCTGATTCAAAAAGGTCTTTCAAATAGAGAGGCAGAAGTTGCTGAACTTGTGTCTAAAGGCTTGTC
CAACAAGGAAGTTGCGAACCAGCTTTTTGTAACTGAGAAAACAGTTAAATTTCACCTCACAAACATCTACAAAAAAATGA
ATGTGAAGTCTCGTGCACAGTTGATCGTATGGTGCTTGCCTCACCTGGGCTTCGTTGAAACCGAAGTTCGCGCTGAGAAC
AACAACCAGGCGGCTGCTGCGACTGCATTCAACAACAATGCAACTCAAACGATCCCAGCTGGATCTGCGACTGTTGCAGG
TACTACAACTCTACCAGGTAGCGGTTTGAACCGTGGCGGTAACTCCGATATTGGTATGGGCGGCATCTAA

Upstream 100 bases:

>100_bases
TATTACAGGTGGTCGAGGCTACTTTTGGACATGAGTCCTGGGTGGCGTTGAAGGTTTAGACGGATTTAAAAACAAAAACA
ATTAGCGGGAGGGAGCAAGG

Downstream 100 bases:

>100_bases
TCTTTATTGATTAGATTGGTTCTAAGGCGCAGGATGTGGAGACACAGACCTGCGCTTTGTTTTTTAGAAAGGGGCTGCAT
CTTGGCTGCTTCAAAAACCG

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator LuxR Family Protein; LuxR Family Transcriptional Regulator; Two Component Transcriptional Regulator LuxR Family

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MLRDVLIQKGLSNREAEVAELVSKGLSNKEVANQLFVTEKTVKFHLTNIYKKMNVKSRAQLIVWCLPHLGFVETEVRAEN
NNQAAAATAFNNNATQTIPAGSATVAGTTTLPGSGLNRGGNSDIGMGGI

Sequences:

>Translated_129_residues
MLRDVLIQKGLSNREAEVAELVSKGLSNKEVANQLFVTEKTVKFHLTNIYKKMNVKSRAQLIVWCLPHLGFVETEVRAEN
NNQAAAATAFNNNATQTIPAGSATVAGTTTLPGSGLNRGGNSDIGMGGI
>Mature_129_residues
MLRDVLIQKGLSNREAEVAELVSKGLSNKEVANQLFVTEKTVKFHLTNIYKKMNVKSRAQLIVWCLPHLGFVETEVRAEN
NNQAAAATAFNNNATQTIPAGSATVAGTTTLPGSGLNRGGNSDIGMGGI

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13741; Mature: 13741

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRDVLIQKGLSNREAEVAELVSKGLSNKEVANQLFVTEKTVKFHLTNIYKKMNVKSRAQ
CCHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHH
LIVWCLPHLGFVETEVRAENNNQAAAATAFNNNATQTIPAGSATVAGTTTLPGSGLNRGG
EEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEECCCCCCCCCCCCCCC
NSDIGMGGI
CCCCCCCCC
>Mature Secondary Structure
MLRDVLIQKGLSNREAEVAELVSKGLSNKEVANQLFVTEKTVKFHLTNIYKKMNVKSRAQ
CCHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHH
LIVWCLPHLGFVETEVRAENNNQAAAATAFNNNATQTIPAGSATVAGTTTLPGSGLNRGG
EEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEECCCCCCCCCCCCCCC
NSDIGMGGI
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA