| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42523237
Identifier: 42523237
GI number: 42523237
Start: 1675972
End: 1678845
Strand: Direct
Name: 42523237
Synonym: Bd1743
Alternate gene names: NA
Gene position: 1675972-1678845 (Clockwise)
Preceding gene: 42523236
Following gene: 42523238
Centisome position: 44.3
GC content: 51.53
Gene sequence:
>2874_bases ATGAATTGCACTCAATTAAATTCAACGGAGCCTTGGATGAACATGAAGGTACTGGTATCCCTTTTGGTGATCGCGTCTGT CGTAAATGCACAGGAGCAAAATCCCCCTCTGACCCTGGAAGAAGCCGCCAAGCTTTATAAGCCCACCTACAAGACCAACT TCAGTACCGATATGACGGCTTTCATGCAGAACTCGCCGATCTTTAATGGACTGGGTTTTGTATATGTCAATCCCAACGGG GTTTCTCCAAAGATCACTGAAACGGTGACCTTCAACACCAATACAATCAAAGTCCCGGTCACTACGACGACAATTGTGGA TGTGCCATACACTTATACGGTGCCTGTGACCACCACCACCACGGTCACGGTGCCTTACACCTACACAGTCCCTGTAACGA CCAGCTGGACAACGACTTCTGTGGTTCGCACCGAAGTTGTCACTCCGTACTCAGTTATTTCAAATTCGGGCAATTTCAAC CTTACTGCTGGAGTGTCTCCGGTCATTCAATCCACCGTGGGTGATGTGGTCAATATGGCAATGGCCAGCCCCCACAGCCT GCCAAAGAGTGAAAACTACCAGCTCGTGGGAACTGATGCTCCGGGATACTGGGTGGTGAATGGCGCTCCGACGAGCGCTG CGGACGTTCGCGCCGCGATTGGGTCAAAGGGTTCTAATCAGCCCTTTGATCCCTGGGGTGCGGGGGCGGTGGATCTGTCG GGCTGGACGACTACGGGAACAAGCAGCTCGTCTGTCACAAATGTTGTCACCAATCCTGCAGACTATGTCGATGGCAACGG AGTTCTGCACCGTGGTCGCACTGTGACCGTTTCAACTTATTCTTCCGTTGAAGATCGTACCATTGTTCGTTTGTATTCTT GGAATGACTCCAACGGAAATGGCATCGTTGATGATACGGATCAGGTTCAGATCCTGCAAGGCGGGCGCTTCACTGGCGAG GCCACATCAGTGGACACCATTGAAAGTGGCGAACGCGTCACCTACCGAGAAGAAACGGTGACTGAACATCACACGGCCAC CCATCAGGAAGAGCGCACAGGCACTCGTGAAGAAACCCGCACCGAAACTCACGATGAAGAGCGCACCGGTGTTCGTCAGG AAGAGCGCACTGAAACCCATGAAGAGGAACGCACCGAAACAACCAAACAGGTGACCCAGAACAAGAAAAACGTCTGGAAA TTCAGTTTCTCTCCGATCCTGTCATTGGACGTGCAAACTCCGACCAAGATCACAAGTCTTGATTCCCAGTTTGTGGTTCC GACGGTGTCTGAAGGTGTCAGCAGAAAATTCATTGAGCCGGCATCTCAAAACAAGGGCTTCCTTGTTGAAAAGAAAATCG CCGTAACAGGTGTCGTGGGCGGGAATGTGGTGGCTCAGTATTCCTCTTGGAAACCGGGCACGGCGATCACCTTGGGGATG GCTCCCATTGCCGGGACAGAGAAAACTTACCGTACTGTTGTTAAAACCGGCTACGAGGCCGAAAACGTATCGGTGCCTTC TGTTCCGTCGAAGCTGGCGGATCTGAAAAAGCTTAAAGTCGGCGACTCCCTGAGTTTTGCTCAAACGGGTGGGGTTATGT TCTCTGCGGGTGTGGCTTACGTGGCCATGAACGTGGGTGTGAACTATGTGGCTTTCGGCCAGTGGAAAACCGAAGTTCAA AGAGTCGGCGACAGCATCTATTATGTGAATCGCACGGCACTGAAGCTGAATAACTTTGGTGCTTCTATCGGAACCACCCT GACAGTGGCCTATACGGCCAACCAGTTTAAATCCACAGATTCTCAGTTCTCGTGGTTGTTCAACGCCGCCGACCCACAAG GAGCCAAGGCCCTGGAGAACTTTGTTTTCAAAGGGATTGCCCTGGATGCCCAGAAAGTTGTGGACTCCAATGGTGAAGCT TCAGTGATGAAAGTCACCAAGCAGGAAAATATCGCCCGCGGCGCCATGCGCACGATCAGCATGGGGGTGCCTTATGTCAC CGCCAGCTGGGGTAAAGGTCGTATCAACTCCACTCAGTTGACCCAGTACTTCCCTGACAACACGTTGGGGGATGCGAACT ATTCTGTGTACTTGAAAGCGCGTGACAGTCGCATGTTCAACTGGATTGAAAACTCAACGACAGCATTCTCTGCTGGCCGC TACTTTGTTCGTGATGTGAATACCAATGATCTTCAGGACTCCGGCTATATGGGGCAGTTCATTGTGTCTTACACGGACAC TCATACCAAGGGCTCAGAGCTACAGCGCGTGGTGAATCAACTGGTGGCATTGACGGGGATGCATAAAGAGCTTTATGTCA AAGTTCCGGATATGAAGAACATCGGTTATAGCACTCTGGCCTTCAGTTTGAATTTTGATAAGTCAGCCACGGATTTCCTG ATGGCTTTGGCAACGGACCGCCAGGCTTCGCGCAAGCTTGAAAGAGACGCTCAGGTGTTCCTGAATGGTTATATCCGCTC CAACGGCTTCAACAGAGCGCAAAACTCTTCCGACCAGGATCCTATCAAAATGTGCGGGACGGTGTACAACCTTGATATCA GTGTTTGTATCCGCCAGGCGCAGGACGCCACTTTGCACGCCACCGGCGAGGCAATTGTTAATCTTCGTGATATGAAGCTG GCTTTGGATCGCGGTAATCGTAAGGCCTTCACTGTGGCTTATGCGGACTTCGGCAAGTCTTTGACTTCCAGCCCGTTCAC ATTCCAGGCGATCTTGTCTGCGGCGGTGGCGGGGACAGCGGGTAAAGGTGTGACCTCTTCTTACAGTGTCTCTGGGACAC GCATTAAGAACTACTCTTTGACGCCAAGCTGGGACGCTGCTTTGGTGAATGAAGTAAAACCTTTGGTTCAATAG
Upstream 100 bases:
>100_bases GGCGGTTATTCCGGACTGCCAGGCTGCCGGGGACAGTAATATTTTCCAACCAACTATAAACAAAAAGTCTTTTCTTTGTG TTCGATGAAAATGCCCGTAT
Downstream 100 bases:
>100_bases GCCCCCGACATTCAAAATTCTTAACGAAAGCCAGGTTTCAGGACCTGGCTTTTTTGTTTTTCATTGCTATAGTTCTGAAT GGATTGCGAGGTGCTTATGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 957; Mature: 957
Protein sequence:
>957_residues MNCTQLNSTEPWMNMKVLVSLLVIASVVNAQEQNPPLTLEEAAKLYKPTYKTNFSTDMTAFMQNSPIFNGLGFVYVNPNG VSPKITETVTFNTNTIKVPVTTTTIVDVPYTYTVPVTTTTTVTVPYTYTVPVTTSWTTTSVVRTEVVTPYSVISNSGNFN LTAGVSPVIQSTVGDVVNMAMASPHSLPKSENYQLVGTDAPGYWVVNGAPTSAADVRAAIGSKGSNQPFDPWGAGAVDLS GWTTTGTSSSSVTNVVTNPADYVDGNGVLHRGRTVTVSTYSSVEDRTIVRLYSWNDSNGNGIVDDTDQVQILQGGRFTGE ATSVDTIESGERVTYREETVTEHHTATHQEERTGTREETRTETHDEERTGVRQEERTETHEEERTETTKQVTQNKKNVWK FSFSPILSLDVQTPTKITSLDSQFVVPTVSEGVSRKFIEPASQNKGFLVEKKIAVTGVVGGNVVAQYSSWKPGTAITLGM APIAGTEKTYRTVVKTGYEAENVSVPSVPSKLADLKKLKVGDSLSFAQTGGVMFSAGVAYVAMNVGVNYVAFGQWKTEVQ RVGDSIYYVNRTALKLNNFGASIGTTLTVAYTANQFKSTDSQFSWLFNAADPQGAKALENFVFKGIALDAQKVVDSNGEA SVMKVTKQENIARGAMRTISMGVPYVTASWGKGRINSTQLTQYFPDNTLGDANYSVYLKARDSRMFNWIENSTTAFSAGR YFVRDVNTNDLQDSGYMGQFIVSYTDTHTKGSELQRVVNQLVALTGMHKELYVKVPDMKNIGYSTLAFSLNFDKSATDFL MALATDRQASRKLERDAQVFLNGYIRSNGFNRAQNSSDQDPIKMCGTVYNLDISVCIRQAQDATLHATGEAIVNLRDMKL ALDRGNRKAFTVAYADFGKSLTSSPFTFQAILSAAVAGTAGKGVTSSYSVSGTRIKNYSLTPSWDAALVNEVKPLVQ
Sequences:
>Translated_957_residues MNCTQLNSTEPWMNMKVLVSLLVIASVVNAQEQNPPLTLEEAAKLYKPTYKTNFSTDMTAFMQNSPIFNGLGFVYVNPNG VSPKITETVTFNTNTIKVPVTTTTIVDVPYTYTVPVTTTTTVTVPYTYTVPVTTSWTTTSVVRTEVVTPYSVISNSGNFN LTAGVSPVIQSTVGDVVNMAMASPHSLPKSENYQLVGTDAPGYWVVNGAPTSAADVRAAIGSKGSNQPFDPWGAGAVDLS GWTTTGTSSSSVTNVVTNPADYVDGNGVLHRGRTVTVSTYSSVEDRTIVRLYSWNDSNGNGIVDDTDQVQILQGGRFTGE ATSVDTIESGERVTYREETVTEHHTATHQEERTGTREETRTETHDEERTGVRQEERTETHEEERTETTKQVTQNKKNVWK FSFSPILSLDVQTPTKITSLDSQFVVPTVSEGVSRKFIEPASQNKGFLVEKKIAVTGVVGGNVVAQYSSWKPGTAITLGM APIAGTEKTYRTVVKTGYEAENVSVPSVPSKLADLKKLKVGDSLSFAQTGGVMFSAGVAYVAMNVGVNYVAFGQWKTEVQ RVGDSIYYVNRTALKLNNFGASIGTTLTVAYTANQFKSTDSQFSWLFNAADPQGAKALENFVFKGIALDAQKVVDSNGEA SVMKVTKQENIARGAMRTISMGVPYVTASWGKGRINSTQLTQYFPDNTLGDANYSVYLKARDSRMFNWIENSTTAFSAGR YFVRDVNTNDLQDSGYMGQFIVSYTDTHTKGSELQRVVNQLVALTGMHKELYVKVPDMKNIGYSTLAFSLNFDKSATDFL MALATDRQASRKLERDAQVFLNGYIRSNGFNRAQNSSDQDPIKMCGTVYNLDISVCIRQAQDATLHATGEAIVNLRDMKL ALDRGNRKAFTVAYADFGKSLTSSPFTFQAILSAAVAGTAGKGVTSSYSVSGTRIKNYSLTPSWDAALVNEVKPLVQ >Mature_957_residues MNCTQLNSTEPWMNMKVLVSLLVIASVVNAQEQNPPLTLEEAAKLYKPTYKTNFSTDMTAFMQNSPIFNGLGFVYVNPNG VSPKITETVTFNTNTIKVPVTTTTIVDVPYTYTVPVTTTTTVTVPYTYTVPVTTSWTTTSVVRTEVVTPYSVISNSGNFN LTAGVSPVIQSTVGDVVNMAMASPHSLPKSENYQLVGTDAPGYWVVNGAPTSAADVRAAIGSKGSNQPFDPWGAGAVDLS GWTTTGTSSSSVTNVVTNPADYVDGNGVLHRGRTVTVSTYSSVEDRTIVRLYSWNDSNGNGIVDDTDQVQILQGGRFTGE ATSVDTIESGERVTYREETVTEHHTATHQEERTGTREETRTETHDEERTGVRQEERTETHEEERTETTKQVTQNKKNVWK FSFSPILSLDVQTPTKITSLDSQFVVPTVSEGVSRKFIEPASQNKGFLVEKKIAVTGVVGGNVVAQYSSWKPGTAITLGM APIAGTEKTYRTVVKTGYEAENVSVPSVPSKLADLKKLKVGDSLSFAQTGGVMFSAGVAYVAMNVGVNYVAFGQWKTEVQ RVGDSIYYVNRTALKLNNFGASIGTTLTVAYTANQFKSTDSQFSWLFNAADPQGAKALENFVFKGIALDAQKVVDSNGEA SVMKVTKQENIARGAMRTISMGVPYVTASWGKGRINSTQLTQYFPDNTLGDANYSVYLKARDSRMFNWIENSTTAFSAGR YFVRDVNTNDLQDSGYMGQFIVSYTDTHTKGSELQRVVNQLVALTGMHKELYVKVPDMKNIGYSTLAFSLNFDKSATDFL MALATDRQASRKLERDAQVFLNGYIRSNGFNRAQNSSDQDPIKMCGTVYNLDISVCIRQAQDATLHATGEAIVNLRDMKL ALDRGNRKAFTVAYADFGKSLTSSPFTFQAILSAAVAGTAGKGVTSSYSVSGTRIKNYSLTPSWDAALVNEVKPLVQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 104188; Mature: 104188
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNCTQLNSTEPWMNMKVLVSLLVIASVVNAQEQNPPLTLEEAAKLYKPTYKTNFSTDMTA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHH FMQNSPIFNGLGFVYVNPNGVSPKITETVTFNTNTIKVPVTTTTIVDVPYTYTVPVTTTT HHCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEEEEEEEEEECCEEEEEEEEEEE TVTVPYTYTVPVTTSWTTTSVVRTEVVTPYSVISNSGNFNLTAGVSPVIQSTVGDVVNMA EEEEEEEEEEEEECCCCCHHEEEECCCCCHHHHCCCCCEEEECCCCHHHHHHHHHHHHHH MASPHSLPKSENYQLVGTDAPGYWVVNGAPTSAADVRAAIGSKGSNQPFDPWGAGAVDLS HCCCCCCCCCCCEEEEECCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCEEECC GWTTTGTSSSSVTNVVTNPADYVDGNGVLHRGRTVTVSTYSSVEDRTIVRLYSWNDSNGN CCEECCCCCCCEEEEECCCHHHCCCCCEEECCEEEEEEECCCCCCCEEEEEEEECCCCCC GIVDDTDQVQILQGGRFTGEATSVDTIESGERVTYREETVTEHHTATHQEERTGTREETR CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCHHHHCCCCHHHC TETHDEERTGVRQEERTETHEEERTETTKQVTQNKKNVWKFSFSPILSLDVQTPTKITSL CCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCEEECC DSQFVVPTVSEGVSRKFIEPASQNKGFLVEKKIAVTGVVGGNVVAQYSSWKPGTAITLGM CCCEECCCHHCCHHHHHCCCCCCCCCEEEEEEEEEEEEECCCEEEEECCCCCCCEEEEEC APIAGTEKTYRTVVKTGYEAENVSVPSVPSKLADLKKLKVGDSLSFAQTGGVMFSAGVAY CCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCEEEECCEEE VAMNVGVNYVAFGQWKTEVQRVGDSIYYVNRTALKLNNFGASIGTTLTVAYTANQFKSTD EEEECCCCEEEECCHHHHHHHHCCEEEEEEEEEEEEECCCCCCCCEEEEEEECCHHCCCC SQFSWLFNAADPQGAKALENFVFKGIALDAQKVVDSNGEASVMKVTKQENIARGAMRTIS CCEEEEEECCCCCHHHHHHHHHHHCEEECHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHH MGVPYVTASWGKGRINSTQLTQYFPDNTLGDANYSVYLKARDSRMFNWIENSTTAFSAGR CCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCCHHHHHCCCCEEEECCC YFVRDVNTNDLQDSGYMGQFIVSYTDTHTKGSELQRVVNQLVALTGMHKELYVKVPDMKN EEEEECCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC IGYSTLAFSLNFDKSATDFLMALATDRQASRKLERDAQVFLNGYIRSNGFNRAQNSSDQD CCCEEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCC PIKMCGTVYNLDISVCIRQAQDATLHATGEAIVNLRDMKLALDRGNRKAFTVAYADFGKS HHHHCCEEEECCHHHHHHHCCCCEEEECCHHEEEEEHEEEEEECCCCEEEEEEEHHHCCH LTSSPFTFQAILSAAVAGTAGKGVTSSYSVSGTRIKNYSLTPSWDAALVNEVKPLVQ HCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEECCCCCHHHHHHHHHHHCC >Mature Secondary Structure MNCTQLNSTEPWMNMKVLVSLLVIASVVNAQEQNPPLTLEEAAKLYKPTYKTNFSTDMTA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHH FMQNSPIFNGLGFVYVNPNGVSPKITETVTFNTNTIKVPVTTTTIVDVPYTYTVPVTTTT HHCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEEEEEEEEEECCEEEEEEEEEEE TVTVPYTYTVPVTTSWTTTSVVRTEVVTPYSVISNSGNFNLTAGVSPVIQSTVGDVVNMA EEEEEEEEEEEEECCCCCHHEEEECCCCCHHHHCCCCCEEEECCCCHHHHHHHHHHHHHH MASPHSLPKSENYQLVGTDAPGYWVVNGAPTSAADVRAAIGSKGSNQPFDPWGAGAVDLS HCCCCCCCCCCCEEEEECCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCEEECC GWTTTGTSSSSVTNVVTNPADYVDGNGVLHRGRTVTVSTYSSVEDRTIVRLYSWNDSNGN CCEECCCCCCCEEEEECCCHHHCCCCCEEECCEEEEEEECCCCCCCEEEEEEEECCCCCC GIVDDTDQVQILQGGRFTGEATSVDTIESGERVTYREETVTEHHTATHQEERTGTREETR CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCHHHHCCCCHHHC TETHDEERTGVRQEERTETHEEERTETTKQVTQNKKNVWKFSFSPILSLDVQTPTKITSL CCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCEEECC DSQFVVPTVSEGVSRKFIEPASQNKGFLVEKKIAVTGVVGGNVVAQYSSWKPGTAITLGM CCCEECCCHHCCHHHHHCCCCCCCCCEEEEEEEEEEEEECCCEEEEECCCCCCCEEEEEC APIAGTEKTYRTVVKTGYEAENVSVPSVPSKLADLKKLKVGDSLSFAQTGGVMFSAGVAY CCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCEEEECCEEE VAMNVGVNYVAFGQWKTEVQRVGDSIYYVNRTALKLNNFGASIGTTLTVAYTANQFKSTD EEEECCCCEEEECCHHHHHHHHCCEEEEEEEEEEEEECCCCCCCCEEEEEEECCHHCCCC SQFSWLFNAADPQGAKALENFVFKGIALDAQKVVDSNGEASVMKVTKQENIARGAMRTIS CCEEEEEECCCCCHHHHHHHHHHHCEEECHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHH MGVPYVTASWGKGRINSTQLTQYFPDNTLGDANYSVYLKARDSRMFNWIENSTTAFSAGR CCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCCHHHHHCCCCEEEECCC YFVRDVNTNDLQDSGYMGQFIVSYTDTHTKGSELQRVVNQLVALTGMHKELYVKVPDMKN EEEEECCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC IGYSTLAFSLNFDKSATDFLMALATDRQASRKLERDAQVFLNGYIRSNGFNRAQNSSDQD CCCEEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCC PIKMCGTVYNLDISVCIRQAQDATLHATGEAIVNLRDMKLALDRGNRKAFTVAYADFGKS HHHHCCEEEECCHHHHHHHCCCCEEEECCHHEEEEEHEEEEEECCCCEEEEEEEHHHCCH LTSSPFTFQAILSAAVAGTAGKGVTSSYSVSGTRIKNYSLTPSWDAALVNEVKPLVQ HCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEECCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA