Click here to switch to the map view.

The map label for this gene is crtY [H]

Identifier: 42523226

GI number: 42523226

Start: 1665060

End: 1666199

Strand: Direct

Name: crtY [H]

Synonym: Bd1730

Alternate gene names: 42523226

Gene position: 1665060-1666199 (Clockwise)

Preceding gene: 42523222

Following gene: 42523231

Centisome position: 44.01

GC content: 50.53

Gene sequence:

>1140_bases
ATGTTTGTTCAGGCGGAAGATAATATTTGGGATTGCCTTATTGTTGGCGGTGGCTTGGCCGGGGGACTGCTGTTGCAGGC
CTTGCGTACAGAGCAACCCGAATTGAAAGTCCTGCTGCTTGAGCGGGGAACACAGCTGGGTGGGAATCACACCTGGAGTT
TTCATGGCTCTGACGTGCCTGGCGACGCCACATGGTTGCAGTCCTTGATCTCAAAAACATGGCCCGCCTATGAAGTTCGT
TTCCCCAGATATCAAAGAAAAATTCAGAGCTCTTATTGCTCCATCAAAGCCCAGGATTTCCATCAAAAGCTTCTTGGTCA
GCACGGCAGTCAAATTCTGCTTCAAGCTTCGGTGCAGGAAGTGCGCCGCGATTCAGTGACCCTGCTTGATGGCAGGATGT
TTCGCGCCAAGTGTGTGATCGATGCCCGTGGCTGGGGGGCTGCTGCTGATGTGAAACGTGGGTATCAGAAATTTGTTGGT
TTGGATGTGAAGCTGTCTCAGCCACACGGGTTGAACCATGTGATTCTGAAAGATGTTCTTGTCCCGCAGGTGGATGGTTA
TCGATTTGTCTATATTTTACCCTGGAGTGAAACAGAACTTCTGGTAGAAGACACTTATTACTCCAATACTCCGGATTTGG
ATGTGACAGCACTCAAGTCAGGCATTCTTGACTATATTGCCGGTAAAGGCTGGGTCACTGAATCCGTGATCAGGCAAGAG
GTGGGCTGTCTGCCTCTGGATCTTTATGATGTGCCTGTGGAGGGTGGCCCATCGGGCGGGCCTTTAAATCTTGGCGCCGC
CTCGGGTGTTTATCAACCGGTAACGGGCTATACGTTCCCACAGACCGTAGCCTGCGTTCAGGCATTAGCCAAAAGCTCTC
TGGACACCTGGGGGGAAGTTCTGCCAGCGCTTCAGCTGAATTATAAAAAGCAAGCACGTTATCTGCGAATCCTGAATCGT
ATGATGTTCCTGGCAGCCGTCCCGGAAAAAAGATACGTGATACTTGAAAGATTTTATCTGCTGTCCGAGGCGTTGATTGA
GCGCTTTTACCAAGGCCGTCTGACGGTTTTGGATCAAGTGCGCATTTTGTGTGGCAAGCCTCCGGTTTCAGTCTGGCGTG
CCTTAAAGAGTTTGTTCTAA

Upstream 100 bases:

>100_bases
AAAGTTCTGCGGCACCAATAGATCGAAGGGAATGTACGATTCATACTTCTCGAAGTGGTTCATAATTGATTGCTATCTTA
AAGCACGATATTTGTAAAAC

Downstream 100 bases:

>100_bases
GCTGCTTCAGAAGTTCTTTTGAAAGTTTTTTTGAAAATTGCGATGCAAGGCCTTGTCCTGATAAGTGTCCTCGGGGGTGT
TCAGGTCTTCTTCGGTGTAC

Product: lycopene cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MFVQAEDNIWDCLIVGGGLAGGLLLQALRTEQPELKVLLLERGTQLGGNHTWSFHGSDVPGDATWLQSLISKTWPAYEVR
FPRYQRKIQSSYCSIKAQDFHQKLLGQHGSQILLQASVQEVRRDSVTLLDGRMFRAKCVIDARGWGAAADVKRGYQKFVG
LDVKLSQPHGLNHVILKDVLVPQVDGYRFVYILPWSETELLVEDTYYSNTPDLDVTALKSGILDYIAGKGWVTESVIRQE
VGCLPLDLYDVPVEGGPSGGPLNLGAASGVYQPVTGYTFPQTVACVQALAKSSLDTWGEVLPALQLNYKKQARYLRILNR
MMFLAAVPEKRYVILERFYLLSEALIERFYQGRLTVLDQVRILCGKPPVSVWRALKSLF

Sequences:

>Translated_379_residues
MFVQAEDNIWDCLIVGGGLAGGLLLQALRTEQPELKVLLLERGTQLGGNHTWSFHGSDVPGDATWLQSLISKTWPAYEVR
FPRYQRKIQSSYCSIKAQDFHQKLLGQHGSQILLQASVQEVRRDSVTLLDGRMFRAKCVIDARGWGAAADVKRGYQKFVG
LDVKLSQPHGLNHVILKDVLVPQVDGYRFVYILPWSETELLVEDTYYSNTPDLDVTALKSGILDYIAGKGWVTESVIRQE
VGCLPLDLYDVPVEGGPSGGPLNLGAASGVYQPVTGYTFPQTVACVQALAKSSLDTWGEVLPALQLNYKKQARYLRILNR
MMFLAAVPEKRYVILERFYLLSEALIERFYQGRLTVLDQVRILCGKPPVSVWRALKSLF
>Mature_379_residues
MFVQAEDNIWDCLIVGGGLAGGLLLQALRTEQPELKVLLLERGTQLGGNHTWSFHGSDVPGDATWLQSLISKTWPAYEVR
FPRYQRKIQSSYCSIKAQDFHQKLLGQHGSQILLQASVQEVRRDSVTLLDGRMFRAKCVIDARGWGAAADVKRGYQKFVG
LDVKLSQPHGLNHVILKDVLVPQVDGYRFVYILPWSETELLVEDTYYSNTPDLDVTALKSGILDYIAGKGWVTESVIRQE
VGCLPLDLYDVPVEGGPSGGPLNLGAASGVYQPVTGYTFPQTVACVQALAKSSLDTWGEVLPALQLNYKKQARYLRILNR
MMFLAAVPEKRYVILERFYLLSEALIERFYQGRLTVLDQVRILCGKPPVSVWRALKSLF

Specific function: Catalyzes the cyclization reaction which converts lycopene to beta-carotene [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008461
- InterPro:   IPR010108
- InterPro:   IPR008671 [H]

Pfam domain/function: PF05834 Lycopene_cycl [H]

EC number: NA

Molecular weight: Translated: 42421; Mature: 42421

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVQAEDNIWDCLIVGGGLAGGLLLQALRTEQPELKVLLLERGTQLGGNHTWSFHGSDVP
CEEECCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEECCCCCC
GDATWLQSLISKTWPAYEVRFPRYQRKIQSSYCSIKAQDFHQKLLGQHGSQILLQASVQE
CHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
VRRDSVTLLDGRMFRAKCVIDARGWGAAADVKRGYQKFVGLDVKLSQPHGLNHVILKDVL
HHHCCEEEECCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHH
VPQVDGYRFVYILPWSETELLVEDTYYSNTPDLDVTALKSGILDYIAGKGWVTESVIRQE
CCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
VGCLPLDLYDVPVEGGPSGGPLNLGAASGVYQPVTGYTFPQTVACVQALAKSSLDTWGEV
HCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHH
LPALQLNYKKQARYLRILNRMMFLAAVPEKRYVILERFYLLSEALIERFYQGRLTVLDQV
HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
RILCGKPPVSVWRALKSLF
HHHCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MFVQAEDNIWDCLIVGGGLAGGLLLQALRTEQPELKVLLLERGTQLGGNHTWSFHGSDVP
CEEECCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEECCCCCC
GDATWLQSLISKTWPAYEVRFPRYQRKIQSSYCSIKAQDFHQKLLGQHGSQILLQASVQE
CHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
VRRDSVTLLDGRMFRAKCVIDARGWGAAADVKRGYQKFVGLDVKLSQPHGLNHVILKDVL
HHHCCEEEECCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHH
VPQVDGYRFVYILPWSETELLVEDTYYSNTPDLDVTALKSGILDYIAGKGWVTESVIRQE
CCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
VGCLPLDLYDVPVEGGPSGGPLNLGAASGVYQPVTGYTFPQTVACVQALAKSSLDTWGEV
HCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHH
LPALQLNYKKQARYLRILNRMMFLAAVPEKRYVILERFYLLSEALIERFYQGRLTVLDQV
HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
RILCGKPPVSVWRALKSLF
HHHCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8422926; 7808389 [H]