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The map label for this gene is exoD [H]

Identifier: 42523214

GI number: 42523214

Start: 1654599

End: 1655186

Strand: Direct

Name: exoD [H]

Synonym: Bd1718

Alternate gene names: 42523214

Gene position: 1654599-1655186 (Clockwise)

Preceding gene: 42523212

Following gene: 42523215

Centisome position: 43.74

GC content: 50.0

Gene sequence:

>588_bases
TTGAAAAGTCGATTTATTACCGCCATGGATCTTTTGCAGGAAGAAGCTTCCAAAGGAGACCTCACTTTGCGAAGAGTCTT
CCAACTATTGGGAGAAGAAGGCCACGCCATGCTGGTGTTGTTCTTCTGTCTGCCGTTCTTGCAGCCGATCCCTATTCCCG
GACTTTCCACTCCGTTGGGAATCATGATTTCAGTGGTGGCGTTTTTCCTTTATCTGCAAAGGCCCCCGTGGCTTCCCAAA
CGATTTGAAAATGTGAAACTCTCCTCCGAGCTGGTGATCAAGGTCTCGGAAGTGGCGGAAAAGATCTGGACGTACGTTTC
CCGCATCGTCAAAGAGCGCCTGACCTTCTTCCATGACCTGTGGTTTTTCCGCATGGTGAATCTGGTGGTGTTTGTGATAA
ATGCCGCCCTTCTTTCGCTGCCGTTGCCGATTCCCTTTTCCAACACGGTGCCGGCGGTGGGAATCATTCTGTGCGCCATC
GGCCACATGGAAAAAGACGGTGTTTTTATCCTTTTTAGCTACCTGTGGTGTCTTATTGTTGCTTCGTTCTTTGCAACACT
GGCCATGGGGGCGATCAACTTCGTTTAG

Upstream 100 bases:

>100_bases
TAGTGATAAAGGTGCTGGCAAAAATCTTCCAATCCATCATGGGTCCTTTGTTCGAAAAATGAAAACCTAGTGATAAAAGG
ATAGGTGAGGGAAGGCAAGT

Downstream 100 bases:

>100_bases
CAATCCCAAGGTCCAGCCGTACAGAAAGGACCAACAAGACCTCAAGCTCTTTGTCGGACTTCCCGGGCTGCTCTAAGATG
ATTATCTAGAGGGGGTACTC

Product: exopolysaccharide synthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MKSRFITAMDLLQEEASKGDLTLRRVFQLLGEEGHAMLVLFFCLPFLQPIPIPGLSTPLGIMISVVAFFLYLQRPPWLPK
RFENVKLSSELVIKVSEVAEKIWTYVSRIVKERLTFFHDLWFFRMVNLVVFVINAALLSLPLPIPFSNTVPAVGIILCAI
GHMEKDGVFILFSYLWCLIVASFFATLAMGAINFV

Sequences:

>Translated_195_residues
MKSRFITAMDLLQEEASKGDLTLRRVFQLLGEEGHAMLVLFFCLPFLQPIPIPGLSTPLGIMISVVAFFLYLQRPPWLPK
RFENVKLSSELVIKVSEVAEKIWTYVSRIVKERLTFFHDLWFFRMVNLVVFVINAALLSLPLPIPFSNTVPAVGIILCAI
GHMEKDGVFILFSYLWCLIVASFFATLAMGAINFV
>Mature_195_residues
MKSRFITAMDLLQEEASKGDLTLRRVFQLLGEEGHAMLVLFFCLPFLQPIPIPGLSTPLGIMISVVAFFLYLQRPPWLPK
RFENVKLSSELVIKVSEVAEKIWTYVSRIVKERLTFFHDLWFFRMVNLVVFVINAALLSLPLPIPFSNTVPAVGIILCAI
GHMEKDGVFILFSYLWCLIVASFFATLAMGAINFV

Specific function: Required for nodule invasion. Mutations in this gene lead to sensitivity to alkaline conditions which prevents nodule invasion [H]

COG id: COG3932

COG function: function code R; Uncharacterized ABC-type transport system, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To Synechocystis PCC 6803 slr1875 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010331 [H]

Pfam domain/function: PF06055 ExoD [H]

EC number: NA

Molecular weight: Translated: 22129; Mature: 22129

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSRFITAMDLLQEEASKGDLTLRRVFQLLGEEGHAMLVLFFCLPFLQPIPIPGLSTPLG
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHH
IMISVVAFFLYLQRPPWLPKRFENVKLSSELVIKVSEVAEKIWTYVSRIVKERLTFFHDL
HHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFFRMVNLVVFVINAALLSLPLPIPFSNTVPAVGIILCAIGHMEKDGVFILFSYLWCLIV
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
ASFFATLAMGAINFV
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MKSRFITAMDLLQEEASKGDLTLRRVFQLLGEEGHAMLVLFFCLPFLQPIPIPGLSTPLG
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHH
IMISVVAFFLYLQRPPWLPKRFENVKLSSELVIKVSEVAEKIWTYVSRIVKERLTFFHDL
HHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFFRMVNLVVFVINAALLSLPLPIPFSNTVPAVGIILCAIGHMEKDGVFILFSYLWCLIV
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
ASFFATLAMGAINFV
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1748284; 11481430 [H]