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The map label for this gene is fni

Identifier: 42523129

GI number: 42523129

Start: 1562989

End: 1564032

Strand: Direct

Name: fni

Synonym: Bd1626

Alternate gene names: 42523129

Gene position: 1562989-1564032 (Clockwise)

Preceding gene: 42523128

Following gene: 42523130

Centisome position: 41.32

GC content: 51.72

Gene sequence:

>1044_bases
ATGGACGAGTCCAATAGTCAGTTTGAAAAAAGAAAGCGCGATCATATCAGGATTGCGCTGGATCCAAGGTCCCAGACCGA
TGGACAAAACGGATTGGACTCGATCACTTTGATTCATGAGGCTTTGCCTGATCTGAACTTTAAAGAGGTCGACATTTCGA
CCTCTTTCTTTTTTTCCGGGGAGTCCATCCCACTTTCTTCTCCGATCTTTATCTCTTCAATGACTGCGGGCCACGAAAAG
GGCCGGGAGATCAATGAAGCTTTGGCGCGTCTGAGCGATCGTCGTCAGATTCTGATGGGAGTTGGCTCTCAACGTCGTGA
ACTGGAAGATTCCAATGCTGCCGAAGAATGGGCTCGCGTGCGCAAACAAGCACCGAAGGCCCGCTTGCTTGGCAATATTG
GAATCGCTCAGCTCATCAAGTCGCCGATTGATAAGATCCGCCGACTGATTGATTCCACGGAAGCCGTGGCTTTGTTCGTC
CACCTGAATCCTTTGCAAGAGGCTTTGCAGCCCGAAGGCACGACAGATTTCAAAAACGGCCTGGCGGCGATTGAAAATCT
GGTAAAACTGGCCGGCGTGCCAGTGATTGTGAAGGAAACCGGCTGTGGTTTTTCTGTCGACACCCTGAAGCGACTTTCCA
GCACCGGCATTTACGGTGTGGATGTTAGCGGCAAGGGTGGCACGCACTGGGGCCGCGTGGAAGGTTATCGTTCGGAGGAA
TCCGACATGCTTTATCACGTAGCCCAAACTTTCGCCAACTGGGGCATCAGCACGAAGCAAAGCATGCTGAATGCCATCGA
CGCCCGGGTAGAGTATCAGCTCTGGGCATCGGGCGGCGTGAGAAATGGATTGGAAATTGGTAAACTTATGGCGTTGGGAG
CTTCAAAGGTGGGGGTTGCAAAACCTTTCCTGGAAGCGGCTCTTCAGGGCGATGAGGCTCTTGAGAAACTGCTGACCCAG
TTGGAAACAGAGTTGAAAGTAACTATGTTCTGCACGGGCAGCCGCAATCTGAAAGACCTCCAAAGCAAGAAGGTGATTCA
ATGA

Upstream 100 bases:

>100_bases
ATCAACGACGCAGCAGCATTCACTGCACTTTGCAAACACGCTTTGGCATAAGCCAAAGCTAAAAAGTACAGCAAAGCTCT
GTTAAAGGAGCCTTAGCCCC

Downstream 100 bases:

>100_bases
CAAAACAACTTCAGGATATCTTTAAAGGTTTCTCCAAACTGTCTCGTGAAGAACGTCTGAAAGCACTTAAAGAAGTCGGT
GCATTGAACGAAGCCGAAGC

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase

Number of amino acids: Translated: 347; Mature: 347

Protein sequence:

>347_residues
MDESNSQFEKRKRDHIRIALDPRSQTDGQNGLDSITLIHEALPDLNFKEVDISTSFFFSGESIPLSSPIFISSMTAGHEK
GREINEALARLSDRRQILMGVGSQRRELEDSNAAEEWARVRKQAPKARLLGNIGIAQLIKSPIDKIRRLIDSTEAVALFV
HLNPLQEALQPEGTTDFKNGLAAIENLVKLAGVPVIVKETGCGFSVDTLKRLSSTGIYGVDVSGKGGTHWGRVEGYRSEE
SDMLYHVAQTFANWGISTKQSMLNAIDARVEYQLWASGGVRNGLEIGKLMALGASKVGVAKPFLEAALQGDEALEKLLTQ
LETELKVTMFCTGSRNLKDLQSKKVIQ

Sequences:

>Translated_347_residues
MDESNSQFEKRKRDHIRIALDPRSQTDGQNGLDSITLIHEALPDLNFKEVDISTSFFFSGESIPLSSPIFISSMTAGHEK
GREINEALARLSDRRQILMGVGSQRRELEDSNAAEEWARVRKQAPKARLLGNIGIAQLIKSPIDKIRRLIDSTEAVALFV
HLNPLQEALQPEGTTDFKNGLAAIENLVKLAGVPVIVKETGCGFSVDTLKRLSSTGIYGVDVSGKGGTHWGRVEGYRSEE
SDMLYHVAQTFANWGISTKQSMLNAIDARVEYQLWASGGVRNGLEIGKLMALGASKVGVAKPFLEAALQGDEALEKLLTQ
LETELKVTMFCTGSRNLKDLQSKKVIQ
>Mature_347_residues
MDESNSQFEKRKRDHIRIALDPRSQTDGQNGLDSITLIHEALPDLNFKEVDISTSFFFSGESIPLSSPIFISSMTAGHEK
GREINEALARLSDRRQILMGVGSQRRELEDSNAAEEWARVRKQAPKARLLGNIGIAQLIKSPIDKIRRLIDSTEAVALFV
HLNPLQEALQPEGTTDFKNGLAAIENLVKLAGVPVIVKETGCGFSVDTLKRLSSTGIYGVDVSGKGGTHWGRVEGYRSEE
SDMLYHVAQTFANWGISTKQSMLNAIDARVEYQLWASGGVRNGLEIGKLMALGASKVGVAKPFLEAALQGDEALEKLLTQ
LETELKVTMFCTGSRNLKDLQSKKVIQ

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IDI2_BDEBA (Q6MMK2)

Other databases:

- EMBL:   BX842650
- RefSeq:   NP_968509.1
- ProteinModelPortal:   Q6MMK2
- GeneID:   2735379
- GenomeReviews:   BX842601_GR
- KEGG:   bba:Bd1626
- NMPDR:   fig|264462.1.peg.1479
- HOGENOM:   HBG354479
- OMA:   GSQRAAI
- ProtClustDB:   PRK05437
- BioCyc:   BBAC264462:BD1626-MONOMER
- BRENDA:   5.3.3.2
- GO:   GO:0005737
- HAMAP:   MF_00354
- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10578:SF3
- PIRSF:   PIRSF003314
- TIGRFAMs:   TIGR02151

Pfam domain/function: PF01070 FMN_dh

EC number: =5.3.3.2

Molecular weight: Translated: 38123; Mature: 38123

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDESNSQFEKRKRDHIRIALDPRSQTDGQNGLDSITLIHEALPDLNFKEVDISTSFFFSG
CCCCCHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCEEEEECC
ESIPLSSPIFISSMTAGHEKGREINEALARLSDRRQILMGVGSQRRELEDSNAAEEWARV
CCCCCCCCEEEEHHHCCHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHH
RKQAPKARLLGNIGIAQLIKSPIDKIRRLIDSTEAVALFVHLNPLQEALQPEGTTDFKNG
HHHCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHCCCCCCHHHHH
LAAIENLVKLAGVPVIVKETGCGFSVDTLKRLSSTGIYGVDVSGKGGTHWGRVEGYRSEE
HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCH
SDMLYHVAQTFANWGISTKQSMLNAIDARVEYQLWASGGVRNGLEIGKLMALGASKVGVA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHCCCCCCHH
KPFLEAALQGDEALEKLLTQLETELKVTMFCTGSRNLKDLQSKKVIQ
HHHHHHHHCCHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHCCCCC
>Mature Secondary Structure
MDESNSQFEKRKRDHIRIALDPRSQTDGQNGLDSITLIHEALPDLNFKEVDISTSFFFSG
CCCCCHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCEEEEECC
ESIPLSSPIFISSMTAGHEKGREINEALARLSDRRQILMGVGSQRRELEDSNAAEEWARV
CCCCCCCCEEEEHHHCCHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHH
RKQAPKARLLGNIGIAQLIKSPIDKIRRLIDSTEAVALFVHLNPLQEALQPEGTTDFKNG
HHHCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHCCCCCCHHHHH
LAAIENLVKLAGVPVIVKETGCGFSVDTLKRLSSTGIYGVDVSGKGGTHWGRVEGYRSEE
HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCH
SDMLYHVAQTFANWGISTKQSMLNAIDARVEYQLWASGGVRNGLEIGKLMALGASKVGVA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHCCCCCCHH
KPFLEAALQGDEALEKLLTQLETELKVTMFCTGSRNLKDLQSKKVIQ
HHHHHHHHCCHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA