Definition Bdellovibrio bacteriovorus HD100, complete genome.
Accession NC_005363
Length 3,782,950

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The map label for this gene is 42523047

Identifier: 42523047

GI number: 42523047

Start: 1464026

End: 1465600

Strand: Direct

Name: 42523047

Synonym: Bd1540

Alternate gene names: NA

Gene position: 1464026-1465600 (Clockwise)

Preceding gene: 42523046

Following gene: 42523049

Centisome position: 38.7

GC content: 47.87

Gene sequence:

>1575_bases
ATGAAAAAAATTATTTTGGCAATGTTGTTGTTATCGTTGCAGACGTATGCGCAGACAATCAGTTACAGCGAAAACAGTTC
TTTGAGGCTCGGGGCGGGGGTGGACTTGGACCACCCCGACAAGGCCAAGGCCAATTGTGTTAAAAGTTCTGATCGTGAAT
GGCTGGATGGGAACACTCCCGTTTCAACAACGTTTGACCTAAGCATGATTGAGACCTCCAGCGAGCTGGAAAGAAAAATG
AATTTTGATGTTCAGTTGAATGCGGCGGGCACAATCAAGGCCGTGAATTTTGACAGTCAGAATTACTACCGGGTGATTCA
TAAGTTTCTGGAAAGCAAGAACAGCCTGAATTTTGCGCTGACGGCGGAATTTTCCTACGGTCGCAAAGGCCTGACAGAAG
AGTCCCTGAAGCCCGAGTATCAGACCCTGCTGGACAACGGCAAGTGGCAGGAAGTTTTGAGAAGATGCGGAACGCACTTT
GTTTCAGAGGAGATTCACCGATCCAAAGTGGTCGTTTTGATTCATGTGAAGAATTCCCGCACCGAAGACATCAAGGAACA
GATTCTGGATCTGAAGAACAAACTGAAAGTTCCCAAGCTGAATTTCGGCGGGGATTTGAATGTTCAGTACAAAGAATTCA
TCCGCAAGCTGGATAAGATTGGTTCGGTGGAGGTGAAAGTGGTTTCTGTCGGCGGGCAGGGCGCAGATGCGTTGGGTGTC
TTTGCCAATGAAATTGTGGTGGATGATCTGCAAAGCATAAAAAACGCCGCAGAAAAGTACTTTAGAAGCTTTACGATCGA
GAATTCCCCGGTGTTCGCCTATGTGGTAAAACCGTTGGATATTTTCGAGGGCGCTGAAAACATCCGTCCAAGACAGAAAA
AGTGGCAGCACTTGAAATTACTGGCTGACTGGATTTTTGAGCACGAGGAACTGCTGGCAGAAATCAAAGGTATGCAAGCC
CGGGTCAGCAAAGCCCTTTATGCCGTGTACTTTGAACCAAAGTCGATGGCTCTGGAGACCAGGATCAACGAGATTCGCTC
TCGGGCTGAAGAGTGTCTGGACCGCTACAACTGTGACAACCTTCCGGCCGTGGCACCATTTCCGGTTCATGTCCCATCCC
GCGCCGTCAGTGCGGTTTCATTGAACACGCAGTGTGGGTATCTGCCGGTAAGAAATTCCAACATGCAGATTCTAAGTGAT
GTCCGCGTAGGACTTGATGTGGATGTGATGTATGCCAAGGACATTGAAAATATCGAATTGTTCCGTCTGGATCAAAACGG
CGAATTCCAGAATGCAAACTATGGACAGAATGAAGAACTGACGATGGCAAACAATATTCTGGAATCCGAAGTGGGCCGCA
TCAGAAGATATCAGTCGGTGAACGAGTTTTCCGCCAACCACGTGCTTTCAGACAGCGCCATCCTGTCAGCACAAGACAGC
GTGCTAAAGGCCCAGGAAATCTTCAACGCCGCCTTTAATTCAATCTACATCATGAAGATCCGATTTAAACAGGGTCAGGA
CTTAACCCAGATTCTGGGGACCCCTCCGATGAAAAACTGCTCGATCACAAGATAA

Upstream 100 bases:

>100_bases
TCGGTTCCTGACGACTATTTCGACAAGCTGCCCGAGCTGGGAACAGAAAAGAATTTGAAAATACTCAGAATGAAACTTCC
TTAAGAGCAGGGACAAAGTT

Downstream 100 bases:

>100_bases
CAGTGGATCGCAACTTAATCCAATGCGGGGGCGCGCCCCCGCACCGCAAACCGAGAGCCCCAGCTACCCAAATCTTCCCC
TTTAAATTCAAGTTCCACAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 524; Mature: 524

Protein sequence:

>524_residues
MKKIILAMLLLSLQTYAQTISYSENSSLRLGAGVDLDHPDKAKANCVKSSDREWLDGNTPVSTTFDLSMIETSSELERKM
NFDVQLNAAGTIKAVNFDSQNYYRVIHKFLESKNSLNFALTAEFSYGRKGLTEESLKPEYQTLLDNGKWQEVLRRCGTHF
VSEEIHRSKVVVLIHVKNSRTEDIKEQILDLKNKLKVPKLNFGGDLNVQYKEFIRKLDKIGSVEVKVVSVGGQGADALGV
FANEIVVDDLQSIKNAAEKYFRSFTIENSPVFAYVVKPLDIFEGAENIRPRQKKWQHLKLLADWIFEHEELLAEIKGMQA
RVSKALYAVYFEPKSMALETRINEIRSRAEECLDRYNCDNLPAVAPFPVHVPSRAVSAVSLNTQCGYLPVRNSNMQILSD
VRVGLDVDVMYAKDIENIELFRLDQNGEFQNANYGQNEELTMANNILESEVGRIRRYQSVNEFSANHVLSDSAILSAQDS
VLKAQEIFNAAFNSIYIMKIRFKQGQDLTQILGTPPMKNCSITR

Sequences:

>Translated_524_residues
MKKIILAMLLLSLQTYAQTISYSENSSLRLGAGVDLDHPDKAKANCVKSSDREWLDGNTPVSTTFDLSMIETSSELERKM
NFDVQLNAAGTIKAVNFDSQNYYRVIHKFLESKNSLNFALTAEFSYGRKGLTEESLKPEYQTLLDNGKWQEVLRRCGTHF
VSEEIHRSKVVVLIHVKNSRTEDIKEQILDLKNKLKVPKLNFGGDLNVQYKEFIRKLDKIGSVEVKVVSVGGQGADALGV
FANEIVVDDLQSIKNAAEKYFRSFTIENSPVFAYVVKPLDIFEGAENIRPRQKKWQHLKLLADWIFEHEELLAEIKGMQA
RVSKALYAVYFEPKSMALETRINEIRSRAEECLDRYNCDNLPAVAPFPVHVPSRAVSAVSLNTQCGYLPVRNSNMQILSD
VRVGLDVDVMYAKDIENIELFRLDQNGEFQNANYGQNEELTMANNILESEVGRIRRYQSVNEFSANHVLSDSAILSAQDS
VLKAQEIFNAAFNSIYIMKIRFKQGQDLTQILGTPPMKNCSITR
>Mature_524_residues
MKKIILAMLLLSLQTYAQTISYSENSSLRLGAGVDLDHPDKAKANCVKSSDREWLDGNTPVSTTFDLSMIETSSELERKM
NFDVQLNAAGTIKAVNFDSQNYYRVIHKFLESKNSLNFALTAEFSYGRKGLTEESLKPEYQTLLDNGKWQEVLRRCGTHF
VSEEIHRSKVVVLIHVKNSRTEDIKEQILDLKNKLKVPKLNFGGDLNVQYKEFIRKLDKIGSVEVKVVSVGGQGADALGV
FANEIVVDDLQSIKNAAEKYFRSFTIENSPVFAYVVKPLDIFEGAENIRPRQKKWQHLKLLADWIFEHEELLAEIKGMQA
RVSKALYAVYFEPKSMALETRINEIRSRAEECLDRYNCDNLPAVAPFPVHVPSRAVSAVSLNTQCGYLPVRNSNMQILSD
VRVGLDVDVMYAKDIENIELFRLDQNGEFQNANYGQNEELTMANNILESEVGRIRRYQSVNEFSANHVLSDSAILSAQDS
VLKAQEIFNAAFNSIYIMKIRFKQGQDLTQILGTPPMKNCSITR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59378; Mature: 59378

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIILAMLLLSLQTYAQTISYSENSSLRLGAGVDLDHPDKAKANCVKSSDREWLDGNTP
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCC
VSTTFDLSMIETSSELERKMNFDVQLNAAGTIKAVNFDSQNYYRVIHKFLESKNSLNFAL
CCEEEEEHHHHCHHHHHHHCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEE
TAEFSYGRKGLTEESLKPEYQTLLDNGKWQEVLRRCGTHFVSEEIHRSKVVVLIHVKNSR
EEECCCCCCCCCHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC
TEDIKEQILDLKNKLKVPKLNFGGDLNVQYKEFIRKLDKIGSVEVKVVSVGGQGADALGV
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHH
FANEIVVDDLQSIKNAAEKYFRSFTIENSPVFAYVVKPLDIFEGAENIRPRQKKWQHLKL
HHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEECHHHHHCCCCCCCCHHHHHHHHHH
LADWIFEHEELLAEIKGMQARVSKALYAVYFEPKSMALETRINEIRSRAEECLDRYNCDN
HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC
LPAVAPFPVHVPSRAVSAVSLNTQCGYLPVRNSNMQILSDVRVGLDVDVMYAKDIENIEL
CCCCCCCCCCCCCHHHEEEEECCCCCEEEECCCCHHHHHHHHCCCCEEEEEECCCCCEEE
FRLDQNGEFQNANYGQNEELTMANNILESEVGRIRRYQSVNEFSANHVLSDSAILSAQDS
EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHH
VLKAQEIFNAAFNSIYIMKIRFKQGQDLTQILGTPPMKNCSITR
HHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKKIILAMLLLSLQTYAQTISYSENSSLRLGAGVDLDHPDKAKANCVKSSDREWLDGNTP
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCC
VSTTFDLSMIETSSELERKMNFDVQLNAAGTIKAVNFDSQNYYRVIHKFLESKNSLNFAL
CCEEEEEHHHHCHHHHHHHCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEE
TAEFSYGRKGLTEESLKPEYQTLLDNGKWQEVLRRCGTHFVSEEIHRSKVVVLIHVKNSR
EEECCCCCCCCCHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC
TEDIKEQILDLKNKLKVPKLNFGGDLNVQYKEFIRKLDKIGSVEVKVVSVGGQGADALGV
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHH
FANEIVVDDLQSIKNAAEKYFRSFTIENSPVFAYVVKPLDIFEGAENIRPRQKKWQHLKL
HHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEECHHHHHCCCCCCCCHHHHHHHHHH
LADWIFEHEELLAEIKGMQARVSKALYAVYFEPKSMALETRINEIRSRAEECLDRYNCDN
HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC
LPAVAPFPVHVPSRAVSAVSLNTQCGYLPVRNSNMQILSDVRVGLDVDVMYAKDIENIEL
CCCCCCCCCCCCCHHHEEEEECCCCCEEEECCCCHHHHHHHHCCCCEEEEEECCCCCEEE
FRLDQNGEFQNANYGQNEELTMANNILESEVGRIRRYQSVNEFSANHVLSDSAILSAQDS
EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHH
VLKAQEIFNAAFNSIYIMKIRFKQGQDLTQILGTPPMKNCSITR
HHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA