| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is pilT
Identifier: 42523017
GI number: 42523017
Start: 1431668
End: 1432711
Strand: Direct
Name: pilT
Synonym: Bd1510
Alternate gene names: NA
Gene position: 1431668-1432711 (Clockwise)
Preceding gene: 42523016
Following gene: 42523018
Centisome position: 37.85
GC content: 52.78
Gene sequence:
>1044_bases ATGAGTCTGACCGAACTCCTTTTGCAGGCTAAAGCCAAGAAAGCGGAAGAATTTTTGTTTGTTGTCGGAAGTGAGCCGCG TGCTCGTCTGGCCTCGGGCTGGACAAGTCTGCGCGCAACGCCAGCGCTGATGACGGAATGGAATCTTTTGCAGCAAAGCC TGCTCAGCACCCAGCAAAAAGCGGTGCTTGAAACCACGGGTGTGGTTCAAGGGGAAGCGGCTCTGGACACTTTGCGCATC GGTTTTTCGTTCTTTCAGCAAGACAGCACCATGAAGGCTGTTTTGGACATGGATCTGGACGGTGGAAAGCAGGAAGTGGC CCTGCCGCCTTCTTTGCTGGAAGCCTGCCTGCGCATGAAGGGACTGGTGTTGTTGTCCGGTCCGGGTGAAGCCGGGCAGG TGTGGGCATTGCACCGAATCCTGCAGAAAATTTCTGATGAAAAATCTTTCCTGGGTGTGGTGTTTTCGCGCAAGGCGTTC CCGCAGGTGCGTGAATCCAAATCCTGTTATCTGTATCACAGTGGTGAATTTGCCCGTCCGGAAGAAAAAGAAAGTCTGAT GGCGGGTGTTGATATGGTTGTCTATGACGGCTTTAACGACGAAGAGTCTTTGCTGGAGGCGTTGTCTTTGGCCGAACAGG GTGTCTTCGTGATTTACTCCATGAAGGCTCCGTCTGTGACCAATGCTCTTCGCCGTGCGCTGTCCACTTTGGGCGAGCGC TTTGGCGAACACGGCGCCCCTCGTCTGGCGGAAGTGCTGACGATGGCTTCCGGTCAGTATCCGGTGGCAGGTCTGAGTGG TGAGAAGATCTTTGCTCATGAGGTTCTTTTGATGAAGCCTCAGGTGCGGGGTCTGATTGAAGATCAGGATCTGAAATCTT TGGAGAATCTTTTGACTCAGGCTCCGGAAAACTCCGGCATTCTGACTTTGAATCAATCTTTGCTGCAACATCTGATTCGT CGTCGTGTGGACTTGAAAACCGCGTTTGAAGTGTCCCGCGACCCGGACAACCTCGATCAGCTTCTTAAGAAGGTAGGTAT CTAA
Upstream 100 bases:
>100_bases AACAGGGGATGAGAACTCTGCGCCGAAGTGCGCTGTTAAAGTTAAAACGTGGCGTAACAACTATTGAAGAAGTGCTCAAC GCATCAGTGAAGGACACCTA
Downstream 100 bases:
>100_bases GATGGCAAAATTCCAGTATCAGGCCAAGAATGCCTCTGGCCAAATGGTTCAGGGCGAGATCGAAGCCGCTTCCCAGCAGG AAGCCATCATCCGTCTGCGC
Product: pilT; twitching motility protein PilT
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 347; Mature: 346
Protein sequence:
>347_residues MSLTELLLQAKAKKAEEFLFVVGSEPRARLASGWTSLRATPALMTEWNLLQQSLLSTQQKAVLETTGVVQGEAALDTLRI GFSFFQQDSTMKAVLDMDLDGGKQEVALPPSLLEACLRMKGLVLLSGPGEAGQVWALHRILQKISDEKSFLGVVFSRKAF PQVRESKSCYLYHSGEFARPEEKESLMAGVDMVVYDGFNDEESLLEALSLAEQGVFVIYSMKAPSVTNALRRALSTLGER FGEHGAPRLAEVLTMASGQYPVAGLSGEKIFAHEVLLMKPQVRGLIEDQDLKSLENLLTQAPENSGILTLNQSLLQHLIR RRVDLKTAFEVSRDPDNLDQLLKKVGI
Sequences:
>Translated_347_residues MSLTELLLQAKAKKAEEFLFVVGSEPRARLASGWTSLRATPALMTEWNLLQQSLLSTQQKAVLETTGVVQGEAALDTLRI GFSFFQQDSTMKAVLDMDLDGGKQEVALPPSLLEACLRMKGLVLLSGPGEAGQVWALHRILQKISDEKSFLGVVFSRKAF PQVRESKSCYLYHSGEFARPEEKESLMAGVDMVVYDGFNDEESLLEALSLAEQGVFVIYSMKAPSVTNALRRALSTLGER FGEHGAPRLAEVLTMASGQYPVAGLSGEKIFAHEVLLMKPQVRGLIEDQDLKSLENLLTQAPENSGILTLNQSLLQHLIR RRVDLKTAFEVSRDPDNLDQLLKKVGI >Mature_346_residues SLTELLLQAKAKKAEEFLFVVGSEPRARLASGWTSLRATPALMTEWNLLQQSLLSTQQKAVLETTGVVQGEAALDTLRIG FSFFQQDSTMKAVLDMDLDGGKQEVALPPSLLEACLRMKGLVLLSGPGEAGQVWALHRILQKISDEKSFLGVVFSRKAFP QVRESKSCYLYHSGEFARPEEKESLMAGVDMVVYDGFNDEESLLEALSLAEQGVFVIYSMKAPSVTNALRRALSTLGERF GEHGAPRLAEVLTMASGQYPVAGLSGEKIFAHEVLLMKPQVRGLIEDQDLKSLENLLTQAPENSGILTLNQSLLQHLIRR RVDLKTAFEVSRDPDNLDQLLKKVGI
Specific function: Unknown
COG id: COG2805
COG function: function code NU; Tfp pilus assembly protein, pilus retraction ATPase PilT
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38233; Mature: 38101
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLTELLLQAKAKKAEEFLFVVGSEPRARLASGWTSLRATPALMTEWNLLQQSLLSTQQK CCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHH AVLETTGVVQGEAALDTLRIGFSFFQQDSTMKAVLDMDLDGGKQEVALPPSLLEACLRMK HHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHEECCCCCCCCCCCCCHHHHHHHHHHC GLVLLSGPGEAGQVWALHRILQKISDEKSFLGVVFSRKAFPQVRESKSCYLYHSGEFARP CEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHCCCCEEEEECCCCCCC EEKESLMAGVDMVVYDGFNDEESLLEALSLAEQGVFVIYSMKAPSVTNALRRALSTLGER HHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHH FGEHGAPRLAEVLTMASGQYPVAGLSGEKIFAHEVLLMKPQVRGLIEDQDLKSLENLLTQ HCCCCCHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHEECHHHHCCCCCHHHHHHHHHHHH APENSGILTLNQSLLQHLIRRRVDLKTAFEVSRDPDNLDQLLKKVGI CCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC >Mature Secondary Structure SLTELLLQAKAKKAEEFLFVVGSEPRARLASGWTSLRATPALMTEWNLLQQSLLSTQQK CHHHHHHHHHHHHHCCEEEEECCCCHHHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHH AVLETTGVVQGEAALDTLRIGFSFFQQDSTMKAVLDMDLDGGKQEVALPPSLLEACLRMK HHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHEECCCCCCCCCCCCCHHHHHHHHHHC GLVLLSGPGEAGQVWALHRILQKISDEKSFLGVVFSRKAFPQVRESKSCYLYHSGEFARP CEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHCCCCEEEEECCCCCCC EEKESLMAGVDMVVYDGFNDEESLLEALSLAEQGVFVIYSMKAPSVTNALRRALSTLGER HHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHH FGEHGAPRLAEVLTMASGQYPVAGLSGEKIFAHEVLLMKPQVRGLIEDQDLKSLENLLTQ HCCCCCHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHEECHHHHCCCCCHHHHHHHHHHHH APENSGILTLNQSLLQHLIRRRVDLKTAFEVSRDPDNLDQLLKKVGI CCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA