| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is camA [H]
Identifier: 42522951
GI number: 42522951
Start: 1352131
End: 1353696
Strand: Direct
Name: camA [H]
Synonym: Bd1435
Alternate gene names: 42522951
Gene position: 1352131-1353696 (Clockwise)
Preceding gene: 42522949
Following gene: 42522953
Centisome position: 35.74
GC content: 54.02
Gene sequence:
>1566_bases ATGGGAACCAGTGCTGAATTGAAAGGACCGAATTTATCCAAGGGAGTGGATCTCAGCGAGCTGCGTGAAGATAAAAGTCT GCTGGGCTATGTCGGGGAAGAGCCGGTGATTCTGGTTCGCCATGATGAAGAGTACTTTGCCATCGGTGCGACCTGTTCAC ACTATGGCGGTCCTCTGGCTGATGGACTGGTGGTCGGAGAAACTGTGCACTGTCCATGGCACCATGCCTGTTTTGATCTG CGCACGGGGGAGGCATTGAAGGCTCCGGCTTTGAATCCTGTTTCGGCCTACAATGTGGAAGTGCGCGGAAGCAAGGTCTT TGTCACCAGCAAAAAAGAAAGCACGGTGCGGCCGCGGGAGTGGAGTGAATCGCAGAGGTACGTCATCGTGGGTTCCGGAG CTGCGGGGACCGCCGCGGCAATCATGCTGCGCAAACAGGGTTTTATCGGTTCCATCACTATTGTCAGCGAAGACAAGTCG TTGCCTTATGACCGTCCGAATCTGTCGAAGGACTATCTGGCGGGGAATATCCCGGAAGACTGGGTGCCTTTGGAGACCGA GGAATTCTATCAGACTCACAAAATTCACTTTGAACTTTCAACGAAGGCGGAAAAGGTCGATGCTCACAGGCGCAGTGTGT TCCTGTCGAATGGAAAAACTTTGCGCTATGACCGACTGTTGCTGGCGACAGGTGGGGAACCGATCCACCCGCCGATTCCG GGCATCAAGCAGGATCACGTGTTTTATCTGCGCACCCTGCAGGACTGCCAGCGCATTATCGGTCGCACATCCTGGGCGCA AAAAGTGGTGATTGTGGGGGCCGGATTTATCGGCCTTGAGGTGGCGGCAGCCCTTCGCCAGCGCAATCTGGAAGTGCATG TGGTGGCACCGGAAGAGATGCCCTTGTTGAAAGTTGTCGGCGTCCATGTTGGAAGTGTGCTGCACAAACTGCATGAAGAA CACGGGGTGATCTTCCATCTGGGGCACACGATCAAAGAAATCCGTCAGCGCAGTGTTCTGCTGGATGACGGGCACAGTGT GGACTGTGACTTTGTGATAGTGGGCACGGGAATTCACCCTAACACTCAATTGGCTGAACAGGCGGGTTGCTGGGTCGAAA ATGGGGTGCTGGTGAATGAATATCTTGAAACCAGTGTGCCTGGCATTTTTGCGGCGGGGGACATTGCCAGATGGCCAGAC CCTCACAGTCAGCGCTCCATCCGGGTGGAACACTGGGAGGTCGCCGAACGCCAAGGGCAAACGGCGGCATTGAACATGAT GGGGGACCGGATAAAGTTCCAGGATGTGCCGTTCTTCTGGACACAGCACTATGATTTGAGCTTGGGATACGTCGGACACT CAGATCGCTTTGATAGAATGGATGTGATGGGGGATCTTAACAGCAGAGATTTCGCTGTGGCCTATTATGAAGATCAAAAA GTGGCTGCAGTACTGACGCTGGGCCGTGATCGGGAAAGCCTTTTGGTCGAAGAGGCGATCGGCCAGTACGATGAGAAGAA GATCCACGAGATCTTCCATCAACACGAACGTGATCATCATCCCTAA
Upstream 100 bases:
>100_bases TTTACATTGCAACTGTGTTGCTTTTTAGCATTTTCGTCGAGGTCCTGCTCCAGCCTGAAGCGGAAAATTACTATGATATG CCCATTCAAAGGAGTGTCTG
Downstream 100 bases:
>100_bases AGCAGAAACCCCCGGAAAGATCCGGGGGTGTTTGATTGACTAGTGTGCAGTGGCGGACGGGGAACGAAGTTCGTGGAAGT CGATTTCTAAAGAAATCTCA
Product: putative NAD(FAD)-dependent dehydrogenase
Products: Oxidized Ferredoxin; NADH; cis-3-(carboxyethyl)-3,5-cyclohexadiene-1,2-diol; NAD [C]
Alternate protein names: NA
Number of amino acids: Translated: 521; Mature: 520
Protein sequence:
>521_residues MGTSAELKGPNLSKGVDLSELREDKSLLGYVGEEPVILVRHDEEYFAIGATCSHYGGPLADGLVVGETVHCPWHHACFDL RTGEALKAPALNPVSAYNVEVRGSKVFVTSKKESTVRPREWSESQRYVIVGSGAAGTAAAIMLRKQGFIGSITIVSEDKS LPYDRPNLSKDYLAGNIPEDWVPLETEEFYQTHKIHFELSTKAEKVDAHRRSVFLSNGKTLRYDRLLLATGGEPIHPPIP GIKQDHVFYLRTLQDCQRIIGRTSWAQKVVIVGAGFIGLEVAAALRQRNLEVHVVAPEEMPLLKVVGVHVGSVLHKLHEE HGVIFHLGHTIKEIRQRSVLLDDGHSVDCDFVIVGTGIHPNTQLAEQAGCWVENGVLVNEYLETSVPGIFAAGDIARWPD PHSQRSIRVEHWEVAERQGQTAALNMMGDRIKFQDVPFFWTQHYDLSLGYVGHSDRFDRMDVMGDLNSRDFAVAYYEDQK VAAVLTLGRDRESLLVEEAIGQYDEKKIHEIFHQHERDHHP
Sequences:
>Translated_521_residues MGTSAELKGPNLSKGVDLSELREDKSLLGYVGEEPVILVRHDEEYFAIGATCSHYGGPLADGLVVGETVHCPWHHACFDL RTGEALKAPALNPVSAYNVEVRGSKVFVTSKKESTVRPREWSESQRYVIVGSGAAGTAAAIMLRKQGFIGSITIVSEDKS LPYDRPNLSKDYLAGNIPEDWVPLETEEFYQTHKIHFELSTKAEKVDAHRRSVFLSNGKTLRYDRLLLATGGEPIHPPIP GIKQDHVFYLRTLQDCQRIIGRTSWAQKVVIVGAGFIGLEVAAALRQRNLEVHVVAPEEMPLLKVVGVHVGSVLHKLHEE HGVIFHLGHTIKEIRQRSVLLDDGHSVDCDFVIVGTGIHPNTQLAEQAGCWVENGVLVNEYLETSVPGIFAAGDIARWPD PHSQRSIRVEHWEVAERQGQTAALNMMGDRIKFQDVPFFWTQHYDLSLGYVGHSDRFDRMDVMGDLNSRDFAVAYYEDQK VAAVLTLGRDRESLLVEEAIGQYDEKKIHEIFHQHERDHHP >Mature_520_residues GTSAELKGPNLSKGVDLSELREDKSLLGYVGEEPVILVRHDEEYFAIGATCSHYGGPLADGLVVGETVHCPWHHACFDLR TGEALKAPALNPVSAYNVEVRGSKVFVTSKKESTVRPREWSESQRYVIVGSGAAGTAAAIMLRKQGFIGSITIVSEDKSL PYDRPNLSKDYLAGNIPEDWVPLETEEFYQTHKIHFELSTKAEKVDAHRRSVFLSNGKTLRYDRLLLATGGEPIHPPIPG IKQDHVFYLRTLQDCQRIIGRTSWAQKVVIVGAGFIGLEVAAALRQRNLEVHVVAPEEMPLLKVVGVHVGSVLHKLHEEH GVIFHLGHTIKEIRQRSVLLDDGHSVDCDFVIVGTGIHPNTQLAEQAGCWVENGVLVNEYLETSVPGIFAAGDIARWPDP HSQRSIRVEHWEVAERQGQTAALNMMGDRIKFQDVPFFWTQHYDLSLGYVGHSDRFDRMDVMGDLNSRDFAVAYYEDQKV AAVLTLGRDRESLLVEEAIGQYDEKKIHEIFHQHERDHHP
Specific function: The oxidation of camphor by cytochrome P450-CAM requires the participation of a flavoprotein, putidaredoxin reductase, and an iron-sulfur protein, putidaredoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation [H]
COG id: COG0446
COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI21389617, Length=505, Percent_Identity=33.4653465346535, Blast_Score=290, Evalue=2e-78, Organism=Homo sapiens, GI65787454, Length=476, Percent_Identity=33.8235294117647, Blast_Score=288, Evalue=6e-78, Organism=Homo sapiens, GI226437568, Length=476, Percent_Identity=33.8235294117647, Blast_Score=288, Evalue=6e-78, Organism=Homo sapiens, GI22202629, Length=329, Percent_Identity=25.8358662613982, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI4757732, Length=329, Percent_Identity=26.4437689969605, Blast_Score=89, Evalue=1e-17, Organism=Escherichia coli, GI1788892, Length=368, Percent_Identity=30.7065217391304, Blast_Score=142, Evalue=4e-35, Organism=Escherichia coli, GI1789065, Length=277, Percent_Identity=30.3249097472924, Blast_Score=115, Evalue=7e-27, Organism=Escherichia coli, GI1789765, Length=283, Percent_Identity=30.3886925795053, Blast_Score=109, Evalue=5e-25, Organism=Escherichia coli, GI1789915, Length=206, Percent_Identity=30.5825242718447, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1787114, Length=303, Percent_Identity=25.4125412541254, Blast_Score=67, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17559934, Length=478, Percent_Identity=30.5439330543933, Blast_Score=207, Evalue=2e-53, Organism=Caenorhabditis elegans, GI32564386, Length=348, Percent_Identity=26.7241379310345, Blast_Score=102, Evalue=7e-22, Organism=Drosophila melanogaster, GI24639257, Length=479, Percent_Identity=34.0292275574113, Blast_Score=269, Evalue=3e-72, Organism=Drosophila melanogaster, GI281359715, Length=479, Percent_Identity=34.0292275574113, Blast_Score=269, Evalue=3e-72, Organism=Drosophila melanogaster, GI281359713, Length=479, Percent_Identity=34.0292275574113, Blast_Score=269, Evalue=3e-72, Organism=Drosophila melanogaster, GI24639250, Length=479, Percent_Identity=34.0292275574113, Blast_Score=269, Evalue=3e-72, Organism=Drosophila melanogaster, GI18543267, Length=479, Percent_Identity=34.0292275574113, Blast_Score=269, Evalue=3e-72, Organism=Drosophila melanogaster, GI24639252, Length=479, Percent_Identity=34.0292275574113, Blast_Score=269, Evalue=3e-72, Organism=Drosophila melanogaster, GI24585130, Length=518, Percent_Identity=31.4671814671815, Blast_Score=254, Evalue=1e-67, Organism=Drosophila melanogaster, GI28573993, Length=369, Percent_Identity=28.9972899728997, Blast_Score=109, Evalue=5e-24, Organism=Drosophila melanogaster, GI24581020, Length=369, Percent_Identity=28.9972899728997, Blast_Score=109, Evalue=6e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR004099 - InterPro: IPR001327 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: 1.18.1.3 [C]
Molecular weight: Translated: 58271; Mature: 58139
Theoretical pI: Translated: 6.21; Mature: 6.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTSAELKGPNLSKGVDLSELREDKSLLGYVGEEPVILVRHDEEYFAIGATCSHYGGPLA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEECCHHHCCCCCC DGLVVGETVHCPWHHACFDLRTGEALKAPALNPVSAYNVEVRGSKVFVTSKKESTVRPRE CCEEECCEECCCCHHHEEECCCCCCCCCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCC WSESQRYVIVGSGAAGTAAAIMLRKQGFIGSITIVSEDKSLPYDRPNLSKDYLAGNIPED CCCCCCEEEEECCCCCHHHEEEEECCCCEEEEEEEECCCCCCCCCCCCCHHHHCCCCCCC WVPLETEEFYQTHKIHFELSTKAEKVDAHRRSVFLSNGKTLRYDRLLLATGGEPIHPPIP CCCCCHHHHHEEEEEEEEECCCHHHHHHHHHEEEECCCCEEEEEEEEEEECCCCCCCCCC GIKQDHVFYLRTLQDCQRIIGRTSWAQKVVIVGAGFIGLEVAAALRQRNLEVHVVAPEEM CCCCCCCHHHHHHHHHHHHHCCCCHHCEEEEEECCHHHHHHHHHHHHCCCEEEEECCCCC PLLKVVGVHVGSVLHKLHEEHGVIFHLGHTIKEIRQRSVLLDDGHSVDCDFVIVGTGIHP CHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHCCEEEECCCCCCEEEEEEECCCCC NTQLAEQAGCWVENGVLVNEYLETSVPGIFAAGDIARWPDPHSQRSIRVEHWEVAERQGQ CCHHHHHCCCEEECCEEEEHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEHHHHHHHCCC TAALNMMGDRIKFQDVPFFWTQHYDLSLGYVGHSDRFDRMDVMGDLNSRDFAVAYYEDQK EEEEECCCCEEEEECCCEEEEEEEEEEEEECCCCCCCCHHHHHCCCCCCCEEEEEECCCC VAAVLTLGRDRESLLVEEAIGQYDEKKIHEIFHQHERDHHP EEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC >Mature Secondary Structure GTSAELKGPNLSKGVDLSELREDKSLLGYVGEEPVILVRHDEEYFAIGATCSHYGGPLA CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEECCHHHCCCCCC DGLVVGETVHCPWHHACFDLRTGEALKAPALNPVSAYNVEVRGSKVFVTSKKESTVRPRE CCEEECCEECCCCHHHEEECCCCCCCCCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCC WSESQRYVIVGSGAAGTAAAIMLRKQGFIGSITIVSEDKSLPYDRPNLSKDYLAGNIPED CCCCCCEEEEECCCCCHHHEEEEECCCCEEEEEEEECCCCCCCCCCCCCHHHHCCCCCCC WVPLETEEFYQTHKIHFELSTKAEKVDAHRRSVFLSNGKTLRYDRLLLATGGEPIHPPIP CCCCCHHHHHEEEEEEEEECCCHHHHHHHHHEEEECCCCEEEEEEEEEEECCCCCCCCCC GIKQDHVFYLRTLQDCQRIIGRTSWAQKVVIVGAGFIGLEVAAALRQRNLEVHVVAPEEM CCCCCCCHHHHHHHHHHHHHCCCCHHCEEEEEECCHHHHHHHHHHHHCCCEEEEECCCCC PLLKVVGVHVGSVLHKLHEEHGVIFHLGHTIKEIRQRSVLLDDGHSVDCDFVIVGTGIHP CHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHCCEEEECCCCCCEEEEEEECCCCC NTQLAEQAGCWVENGVLVNEYLETSVPGIFAAGDIARWPDPHSQRSIRVEHWEVAERQGQ CCHHHHHCCCEEECCEEEEHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEHHHHHHHCCC TAALNMMGDRIKFQDVPFFWTQHYDLSLGYVGHSDRFDRMDVMGDLNSRDFAVAYYEDQK EEEEECCCCEEEEECCCEEEEEEEEEEEEECCCCCCCCHHHHHCCCCCCCEEEEEECCCC VAAVLTLGRDRESLLVEEAIGQYDEKKIHEIFHQHERDHHP EEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: FAD. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Reduced Ferredoxin; NAD(+); 3-phenylpropionate; NADH; Proton; O2 [C]
Specific reaction: Reduced Ferredoxin + NAD(+) = Oxidized Ferredoxin + NADH. 3-phenylpropionate + NADH + Proton + O2 = cis-3-(carboxyethyl)-3,5-cyclohexadiene-1,2-diol + NAD [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2180940; 2613690; 3003058; 12011076; 11524002 [H]