Definition Bdellovibrio bacteriovorus HD100, complete genome.
Accession NC_005363
Length 3,782,950

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The map label for this gene is rbpA [H]

Identifier: 42522915

GI number: 42522915

Start: 1323702

End: 1324052

Strand: Direct

Name: rbpA [H]

Synonym: Bd1397

Alternate gene names: 42522915

Gene position: 1323702-1324052 (Clockwise)

Preceding gene: 42522913

Following gene: 42522916

Centisome position: 34.99

GC content: 51.28

Gene sequence:

>351_bases
ATGGGTAAAAAAATCTACGTTGGAAATCTTTCTTATTCTTTGGATGATCAGTCTTTGGCTGACACTTTCGCTGAATTCGG
AAATGTTGAATCTGCACGCATCGTGATCGATCGTGAAACTGGTCGTTCTAAAGGTTTCGCTTTCGTTGAAATGTCTACTG
ACGACGAAGCAGCAACTGCAATCGCTAAATTGAACGGCGTTGAGTTGATGGGTCGCGCGATGAACGTATCTGAAGCTAAA
CCAATGGCTCCTCGTGAGAACCGTGGTGGCTTCGGTGGCGGTCGCGGCGGTGGCGGCGGCGGTAACCGTGGTGGCGGCTT
CGGCGGCGGCAACCGTGGTGGTCGTTTCTAA

Upstream 100 bases:

>100_bases
CTAGAAATTCTCTAGCAAGAATTTAGTCTCTGGAGAGTTTTCGGGCATAGGGCCCAAGACCTCTTAAGAGCTTCCCAAAA
GCAAATCTTAGGAGGTTTAT

Downstream 100 bases:

>100_bases
TTTAAGATTTTAATCTTAGTGAAAAGGGCGGAAAGAAATTTCCGCCCTTTTTTTATTTCTGAATTCTGTCTTTTCTGTCG
ACGCTTCAGTCAGCTTACAC

Product: putative RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MGKKIYVGNLSYSLDDQSLADTFAEFGNVESARIVIDRETGRSKGFAFVEMSTDDEAATAIAKLNGVELMGRAMNVSEAK
PMAPRENRGGFGGGRGGGGGGNRGGGFGGGNRGGRF

Sequences:

>Translated_116_residues
MGKKIYVGNLSYSLDDQSLADTFAEFGNVESARIVIDRETGRSKGFAFVEMSTDDEAATAIAKLNGVELMGRAMNVSEAK
PMAPRENRGGFGGGRGGGGGGNRGGGFGGGNRGGRF
>Mature_115_residues
GKKIYVGNLSYSLDDQSLADTFAEFGNVESARIVIDRETGRSKGFAFVEMSTDDEAATAIAKLNGVELMGRAMNVSEAKP
MAPRENRGGFGGGRGGGGGGNRGGGFGGGNRGGRF

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI14149675, Length=77, Percent_Identity=42.8571428571429, Blast_Score=72, Evalue=7e-14,
Organism=Homo sapiens, GI5174637, Length=82, Percent_Identity=42.6829268292683, Blast_Score=72, Evalue=9e-14,
Organism=Homo sapiens, GI303305009, Length=82, Percent_Identity=42.6829268292683, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI4557493, Length=77, Percent_Identity=42.8571428571429, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI45439316, Length=82, Percent_Identity=42.6829268292683, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI4502847, Length=90, Percent_Identity=37.7777777777778, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI4757926, Length=73, Percent_Identity=42.4657534246575, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI35493811, Length=73, Percent_Identity=42.4657534246575, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI5803137, Length=76, Percent_Identity=39.4736842105263, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI208431833, Length=72, Percent_Identity=44.4444444444444, Blast_Score=62, Evalue=9e-11,
Organism=Homo sapiens, GI4504715, Length=72, Percent_Identity=44.4444444444444, Blast_Score=62, Evalue=9e-11,
Organism=Homo sapiens, GI208431836, Length=72, Percent_Identity=44.4444444444444, Blast_Score=62, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17508587, Length=79, Percent_Identity=44.3037974683544, Blast_Score=72, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17508567, Length=79, Percent_Identity=45.5696202531646, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17508585, Length=75, Percent_Identity=40, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17553656, Length=77, Percent_Identity=41.5584415584416, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71993209, Length=81, Percent_Identity=41.9753086419753, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71993203, Length=81, Percent_Identity=41.9753086419753, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17567131, Length=81, Percent_Identity=40.7407407407407, Blast_Score=65, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17567133, Length=81, Percent_Identity=40.7407407407407, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71999554, Length=92, Percent_Identity=38.0434782608696, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71999552, Length=92, Percent_Identity=38.0434782608696, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321599, Length=79, Percent_Identity=39.2405063291139, Blast_Score=60, Evalue=8e-11,
Organism=Drosophila melanogaster, GI17137710, Length=77, Percent_Identity=38.961038961039, Blast_Score=69, Evalue=8e-13,
Organism=Drosophila melanogaster, GI19920866, Length=73, Percent_Identity=39.7260273972603, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24582412, Length=73, Percent_Identity=39.7260273972603, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24582417, Length=73, Percent_Identity=39.7260273972603, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI45550943, Length=73, Percent_Identity=39.7260273972603, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24582419, Length=73, Percent_Identity=39.7260273972603, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24582423, Length=73, Percent_Identity=39.7260273972603, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24582421, Length=73, Percent_Identity=39.7260273972603, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI17647301, Length=85, Percent_Identity=36.4705882352941, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24654797, Length=86, Percent_Identity=37.2093023255814, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI45552715, Length=86, Percent_Identity=37.2093023255814, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24654810, Length=86, Percent_Identity=37.2093023255814, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24654800, Length=86, Percent_Identity=37.2093023255814, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24654793, Length=86, Percent_Identity=37.2093023255814, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24654807, Length=86, Percent_Identity=37.2093023255814, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI17136378, Length=86, Percent_Identity=37.2093023255814, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24654804, Length=86, Percent_Identity=37.2093023255814, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24650836, Length=79, Percent_Identity=40.5063291139241, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI17738267, Length=79, Percent_Identity=40.5063291139241, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24650840, Length=79, Percent_Identity=40.5063291139241, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24650838, Length=79, Percent_Identity=40.5063291139241, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 11970; Mature: 11839

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MGKKIYVGNLSYSLDDQSLADTFAEFGNVESARIVIDRETGRSKGFAFVEMSTDDEAATA
CCCEEEECCCEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEECCCCHHHHH
IAKLNGVELMGRAMNVSEAKPMAPRENRGGFGGGRGGGGGGNRGGGFGGGNRGGRF
HHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GKKIYVGNLSYSLDDQSLADTFAEFGNVESARIVIDRETGRSKGFAFVEMSTDDEAATA
CCEEEECCCEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEECCCCHHHHH
IAKLNGVELMGRAMNVSEAKPMAPRENRGGFGGGRGGGGGGNRGGGFGGGNRGGRF
HHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]